View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18598_low_8 (Length: 566)
Name: NF18598_low_8
Description: NF18598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18598_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 482; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 12 - 547
Target Start/End: Original strand, 41236727 - 41237262
Alignment:
| Q |
12 |
agtgagaagaaattatcctaaatgtttgcatacccttttgctttcatccatgtcaactttgttgccaaccagtattttgttgacaatattgtctgaagaa |
111 |
Q |
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| T |
41236727 |
agtgacaagaaattatcctaaatgtttgcatacccttttgctttcatccatgtcaactttgttgccaaccagtattttgttgacaatattgtctgaagaa |
41236826 |
T |
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| Q |
112 |
tgttgctcaatgctacgaatccaattcgtgatatctgaaattagcatatggttggtgaatattgcatatgagaaaaaacctttgaagaaaataatacaag |
211 |
Q |
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| T |
41236827 |
tgttgctcaatgctacgaatccaattcgtgatatctgaaattagcatatggttggtgaatattgcatatgagaaaaaacctttgaagaaaataatacaag |
41236926 |
T |
|
| Q |
212 |
atggaaaacattactgttaaatgaagattcatctgtaacatcatagaccagcaatatgcccatagcaccacgatagtaagctgaagtaggaaaagaaagt |
311 |
Q |
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| T |
41236927 |
atggaaaacattactgttaaatgaagattcatctgtaacatcatagaccagcaatatgcccatagcaccacgatagtaagctgaagtaggaaaagaaagt |
41237026 |
T |
|
| Q |
312 |
tagtttatacggtttgactcaaaataaactactccatcgtatcgttttaaggttatatacatatc-gagaaaactaaataattgtgtttctttcggtaga |
410 |
Q |
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| T |
41237027 |
tagtttatacggtttgactcaaaataaactactccatcgta---ttttaaggttatatacatatctgagaaaactaaataattgtgtttctttcggtaga |
41237123 |
T |
|
| Q |
411 |
attatctgtcttttccgtata---aatactt-aaagagtattattaacaaaagaataacacaaaactgacaagtaaaagtcacagagggagtactagaaa |
506 |
Q |
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| T |
41237124 |
attatctgtcttttccgtataaataatacttaaaagagtattattaacaaaagaataacacaaaactgacaagtaaaagtcac--agggagtactagaaa |
41237221 |
T |
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| Q |
507 |
accactctcctttaaaaatcttaccggttgtaattgttcgg |
547 |
Q |
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| T |
41237222 |
accactctcctttaaaaatcttaccggttgtaattgttcgg |
41237262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 6e-26; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 218 - 294
Target Start/End: Original strand, 23385172 - 23385248
Alignment:
| Q |
218 |
aacattactgttaaatgaagattcatctgtaacatcatagaccagcaatatgcccatagcaccacgatagtaagctg |
294 |
Q |
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| T |
23385172 |
aacattactgttaaatgatgcttcatcagtaacatcatagaccagcaatatgcccatggcaccacgatagtaagctg |
23385248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 35 - 148
Target Start/End: Original strand, 23384951 - 23385061
Alignment:
| Q |
35 |
gtttgcatacccttttgctttcatccatgtcaactttgttgccaaccagtattttgttgacaatattgtctgaagaatgttgctcaatgctacgaatcca |
134 |
Q |
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|||||||||||||||||||||| ||||| || ||||||| || |||||||||||||| || ||| || |||| ||||||||||||| | |||||||| |
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| T |
23384951 |
gtttgcatacccttttgctttcgtccatatctgctttgttccctaccagtattttgtt---aacattatccgaagcatgttgctcaatgttgcgaatcca |
23385047 |
T |
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| Q |
135 |
attcgtgatatctg |
148 |
Q |
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|||| ||||||||| |
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| T |
23385048 |
attcctgatatctg |
23385061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 40 - 148
Target Start/End: Complemental strand, 40197382 - 40197277
Alignment:
| Q |
40 |
catacccttttgctttcatccatgtcaactttgttgccaaccagtattttgttgacaatattgtctgaagaatgttgctcaatgctacgaatccaattcg |
139 |
Q |
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||||||| ||||||||||||||||||| |||||||||| |||| ||| ||||| || |||||| |||| ||| ||||||||| |||||||||||||| |
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| T |
40197382 |
catacccgtttgctttcatccatgtcagctttgttgcccaccaatatcttgtt---aacattgtcagaagcatgctgctcaatgttacgaatccaattcc |
40197286 |
T |
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| Q |
140 |
tgatatctg |
148 |
Q |
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||||||||| |
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| T |
40197285 |
tgatatctg |
40197277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 43 - 148
Target Start/End: Original strand, 29346430 - 29346532
Alignment:
| Q |
43 |
acccttttgctttcatccatgtcaactttgttgccaaccagtattttgttgacaatattgtctgaagaatgttgctcaatgctacgaatccaattcgtga |
142 |
Q |
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| T |
29346430 |
acccttttgctttcatccatgtcagccttgttccccactaatattttgttgac---attgtcagaagcatgctgctcaatgttgcgaatccaattcttga |
29346526 |
T |
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| Q |
143 |
tatctg |
148 |
Q |
| |
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| |||| |
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| T |
29346527 |
tgtctg |
29346532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 234 - 294
Target Start/End: Complemental strand, 52032803 - 52032743
Alignment:
| Q |
234 |
gaagattcatctgtaacatcatagaccagcaatatgcccatagcaccacgatagtaagctg |
294 |
Q |
| |
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|||| |||||| ||||||||||| |||||||| || ||||| || |||||||| ||||||| |
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| T |
52032803 |
gaagcttcatcggtaacatcataaaccagcaagatacccatggctccacgataataagctg |
52032743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 35 - 89
Target Start/End: Complemental strand, 20686929 - 20686875
Alignment:
| Q |
35 |
gtttgcatacccttttgctttcatccatgtcaactttgttgccaaccagtatttt |
89 |
Q |
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|||||||||| |||| | |||||||||| ||||||||||| |||||||||||||| |
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| T |
20686929 |
gtttgcatacactttagatttcatccatatcaactttgtttccaaccagtatttt |
20686875 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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