View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18598_low_9 (Length: 563)
Name: NF18598_low_9
Description: NF18598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18598_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 165; Significance: 5e-88; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 108 - 276
Target Start/End: Original strand, 42723182 - 42723350
Alignment:
| Q |
108 |
atgcaacacaatggaccatccatctgaaatttgtaatagaatttactgacaatatacccatggggaattcaaattactagtcaagtctatttactactct |
207 |
Q |
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| T |
42723182 |
atgcaacacaatggaccatccatctgaaatttgtaatagaatttactgacaatatacccatgggaaattcaaattactagtcaagtctatttactactct |
42723281 |
T |
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| Q |
208 |
tatagtatttgtcttttaaataatgcaaaatgtcgagtaagtataacttaaatgataaaaggttgttta |
276 |
Q |
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| T |
42723282 |
tatagtatttgtcttttaaataatgcaaaatgtcgagtaagtataacttaaatgataaaaggttgttta |
42723350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 276 - 547
Target Start/End: Original strand, 42723427 - 42723692
Alignment:
| Q |
276 |
attatgtgtaaatgaagtatgtattagatgattatttatcatgttgtttttnnnnnnnnntttaataaaatatagaattactcctctaggtnnnnnnnta |
375 |
Q |
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| T |
42723427 |
attatgtgtaaataaagtatgtattagatgattctttatcatgttgtttttaaaaaacaaattaa---aatatagaattactcctctaggtaaaaaa-ta |
42723522 |
T |
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| Q |
376 |
ttgaatatgagagaatgatcatgaattagaaatgtatacaagagattataatgtnnnnnnnnncctgcatggtatgacaagggatgatgatgagtaggat |
475 |
Q |
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| T |
42723523 |
ttgaatatgagagaatgatcatgaattagaaatgtatacaagagattataatgtaaaaaaa--cctgcatggtatgacaagggatgatgatgagtaggat |
42723620 |
T |
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| Q |
476 |
aaggatgcgcaggatagagttctctggaccaccccataggaacattgccgtgagtactactactagagatgg |
547 |
Q |
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| T |
42723621 |
aaggatgcgcaggatagagttctctggaccaccccataggaacattgccgtgagtactactactagagatgg |
42723692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 42723070 - 42723136
Alignment:
| Q |
1 |
ataaacaaagttagctagtgtgtcctcattcctccaagtcccaaataactggaagttaccctttatt |
67 |
Q |
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| T |
42723070 |
ataaacaaagttagctagtgtgtcctcattcctccaagtcccaaataactggaggttaccctttatt |
42723136 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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