View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18599_high_11 (Length: 403)
Name: NF18599_high_11
Description: NF18599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18599_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 325; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 388
Target Start/End: Original strand, 13314057 - 13314445
Alignment:
| Q |
1 |
gagaaagaaactgtaaccgttgaaatgaagaagctgattgtgttgattggacgatacattttgaatgagttttcagaaagcgttgttcaaatcggaaaag |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| ||||||||| |||||||||| ||||||| ||||| |
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| T |
13314057 |
gagaaagaaactgtaaccgttgaaatgaagaagccgattgtgttgattggacgatagattttgaaagagttttcaaaaagcgttgtccaaatcgaaaaag |
13314156 |
T |
|
| Q |
101 |
ttttgatttataaaattggtttataca-agtcgagtttgagaatagtgtttttgaggaattggatagtaatgttattcctataattctcatcgaggattg |
199 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13314157 |
ttttgatttataaaattggtttatacagagtcgagtttgagaatgatgtttttgaggaattggatagtaatgttattcctataattctcatcgaggattg |
13314256 |
T |
|
| Q |
200 |
caattttgattaagatttaattcgacgaaagaatgaattggatcaattgttagggaagagcaagggagagaatgagagaatcaatttatgagaaccaaat |
299 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
13314257 |
caattttgattaagatttaattcgacgaaagaatgaattggatcaatcgttagggaagagcgagggagagaatgagagaatcaatttatgagaaccaaat |
13314356 |
T |
|
| Q |
300 |
cacagcataaaggcgacggcgacagtttggtagttttgggaagtagattttgctggaagtaaataaaatgaaaatgtgtaggatgttga |
388 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||| | || ||||||||||||||||||||||||||||||||||| |
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| T |
13314357 |
cacagcataaaggcgacgacgacagtttggtagttttgggaagtagatctcgcaggaagtaaataaaatgaaaatgtgtaggatgttga |
13314445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 13313637 - 13313413
Alignment:
| Q |
1 |
gagaaagaaactgtaaccgttgaaatgaagaagctgattgtgttgattggacgatacattttgaatgagttttcagaaagcgttgttcaaatcggaaaag |
100 |
Q |
| |
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||||||||||||| ||||||||||||||| |||| |||||| ||||||||||||||| ||||||| |||||||||||| |||||||||||| ||||||| |
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| T |
13313637 |
gagaaagaaactggaaccgttgaaatgaataagccgattgtattgattggacgatacgttttgaaagagttttcagaattcgttgttcaaattggaaaag |
13313538 |
T |
|
| Q |
101 |
ttttgatttataaaattggtttataca-agtcgagtttgagaatagtgtttttgaggaattggatagtaatgttattcctataattctcatcgaggattg |
199 |
Q |
| |
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|| ||| | ||||||| |||||||||| ||||||||||||||| |||||||||||| |||||||||||| |||||| | || |||||||||| ||||||| |
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| T |
13313537 |
ttgtgagtcataaaatcggtttatacagagtcgagtttgagaacagtgtttttgagaaattggatagtattgttatccgtagaattctcatcaaggattg |
13313438 |
T |
|
| Q |
200 |
caattttgattaagatttaattcga |
224 |
Q |
| |
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||||||||| || ||||| |||||| |
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| T |
13313437 |
caattttgactatgatttgattcga |
13313413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 35 - 381
Target Start/End: Complemental strand, 13305538 - 13305213
Alignment:
| Q |
35 |
tgattgtgttgattggacgatacattttgaatgagttttcagaaagcgttgttcaaatcggaaaagttttgatttataaaattggtttatacaagtcgag |
134 |
Q |
| |
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||||||| ||| ||||||||| ||||||| |||||||||||||| ||||||||||||| || ||| ||||||||||||||||| || | ||| |
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|
| T |
13305538 |
tgattgtattggttggacgatgtgttttgaaagagttttcagaaag------tcaaatcggaaaaattatgagttataaaattggtttatgca-gaggag |
13305446 |
T |
|
| Q |
135 |
tttgagaatagtgtttttgaggaattggatagtaatgttattcctataattctcatcgaggattgcaattttgattaagatttaattcgacgaaagaatg |
234 |
Q |
| |
|
|||||||| |||||||||||||| | ||||||| || ||||| || |||||||| |||||||||||||| ||||||| ||||| | |
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|
| T |
13305445 |
tttgagaacggtgtttttgaggaaattgatagtagtgctattcgtagaattctca--gaggattgcaatttg------------attcgacagaagaagg |
13305360 |
T |
|
| Q |
235 |
aattggatcaattgttagggaagagcaagggagagaatgagagaatcaatttatgagaaccaaatcacagcataaaggcgacggcgacagtttggtagtt |
334 |
Q |
| |
|
|| ||||||||| ||| ||||||| ||||||||||||||||||||||||| ||||||| |||||||||||| | | || || || ||||||||| | |
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|
| T |
13305359 |
aactggatcaatcgtttaggaagagtgagggagagaatgagagaatcaatttctgagaacaaaatcacagcatgacgacggcgtcggtggtttggtagat |
13305260 |
T |
|
| Q |
335 |
ttgggaagtagattttgctggaagtaaataaaatgaaaatgtgtagg |
381 |
Q |
| |
|
|||||||||||| | || ||||| |||||||||||| |||||||| |
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|
| T |
13305259 |
gtgggaagtagatctcgcaggaaggaaataaaatgaatgtgtgtagg |
13305213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 32 - 164
Target Start/End: Complemental strand, 13301056 - 13300924
Alignment:
| Q |
32 |
agctgattgtgttgattggacgatacattttgaatgagttttcagaaagcgttgttcaaatcggaaaagttttgatttataaaattggtttatacaa-gt |
130 |
Q |
| |
|
|||||||||| ||||||||||||||| ||||||| ||||||| ||||||| ||||||||||| |||||||| ||| ||| ||||| | ||||||||| || |
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|
| T |
13301056 |
agctgattgtattgattggacgatacgttttgaaagagtttt-agaaagcattgttcaaatcagaaaagttatgagttacaaaatcgatttatacaaagt |
13300958 |
T |
|
| Q |
131 |
cgagtttgagaatagtgtttttgaggaattggat |
164 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| |
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|
| T |
13300957 |
cgagtttgagaacggtgtttttgaggaattggat |
13300924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 36 - 300
Target Start/End: Original strand, 13305582 - 13305822
Alignment:
| Q |
36 |
gattgtgttgattggacgatacattttgaatgagttttcagaaagcgttgttcaaatcggaaaagttttgatttataaaattggtttatacaagtcgagt |
135 |
Q |
| |
|
|||||| |||||||| ||||| ||||||| ||||||||||||||||||||||||||| |||||||| ||| ||||||||| |||||| || |
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|
| T |
13305582 |
gattgtattgattggccgatatgttttgaaagagttttcagaaagcgttgttcaaatcagaaaagttgtgagttataaaatcggtttacac--------- |
13305672 |
T |
|
| Q |
136 |
ttgagaatagtgtttttgaggaattggatagtaatgttattcctataattctcatcgaggattgcaattttgattaagatttaattcgacgaaagaatga |
235 |
Q |
| |
|
|||| |||||||||||||||||||||||| |||||||| | |||| |||||||| |||||||||| ||||| |||| ||||| || |
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|
| T |
13305673 |
---agaacggtgtttttgaggaattggatagtagtgttattcgtcaaattatcatcgagtattgcaattt-------gattt-----gacggaagaagga |
13305757 |
T |
|
| Q |
236 |
attggatcaattgttagggaagagcaagggagagaatgagagaatcaatttatgagaaccaaatc |
300 |
Q |
| |
|
||||||||||||||| |||||||| | |||||||||||||||||| |||| ||||||| ||||| |
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|
| T |
13305758 |
attggatcaattgtttgggaagagtgaaggagagaatgagagaatcgatttctgagaacaaaatc |
13305822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 123; Significance: 4e-63; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 35851138 - 35850892
Alignment:
| Q |
1 |
gagaaagaaactgtaaccgttgaaatgaagaagctgattgtgttgattggacgatacattttgaatgagttttcagaaagcgttgttcaaatcggaaaag |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| ||||| ||||||||||||||| ||||||| |||||||||||| |||||| |||||||||||||| |
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|
| T |
35851138 |
gagaaagaaactgtaaccgttgaattgaagaagcctattgtattgattggacgatacgttttgaaagagttttcagaacgcgttgatcaaatcggaaaag |
35851039 |
T |
|
| Q |
101 |
ttttgatttataaaattggtttataca-agtcgagtttgagaatagtgtttttgaggaattggatagtaatgttattcctataattctcatcgaggattg |
199 |
Q |
| |
|
|||||| ||| ||||| |||||||||| |||||| | ||||| ||| ||||||||| |||||||||| || ||||| || ||||||||| |||||||| |
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|
| T |
35851038 |
ttttgagttacaaaatcggtttatacagagtcgactacgagaacggtgattttgaggatttggatagtagtgctattcgtagaattctcattgaggattg |
35850939 |
T |
|
| Q |
200 |
caattttgattaagatttaattcgacgaaagaatgaattggatcaat |
246 |
Q |
| |
|
| ||||||| | ||||| |||||||| ||||||||||||||||||| |
|
|
| T |
35850938 |
cgattttgacgacgatttgattcgacggaagaatgaattggatcaat |
35850892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 3 - 246
Target Start/End: Complemental strand, 35841516 - 35841275
Alignment:
| Q |
3 |
gaaagaaactgtaaccgttgaaatgaagaagctgattgtgttgattggacgatacattttgaatgagttttcagaaagcgttgttcaaatcggaaaagtt |
102 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| |||||| ||||||||||||| ||||||| ||||||||||||| | |||||||||||||||||| |
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|
| T |
35841516 |
gaaagaaactgtaaccgttgaattgaagaagccgattgtattgattggacgatgtgttttgaaagagttttcagaaacc---gttcaaatcggaaaagtt |
35841420 |
T |
|
| Q |
103 |
ttgatttataaaattggtttataca-agtcgagtttgagaatagtgtttttgaggaattggatagtaatgttattcctataattctcatcgaggattgca |
201 |
Q |
| |
|
||| |||| |||| ||||| |||| ||| |||| |||||| ||||||||||||| |||||||||| | ||||| || ||||||||| ||||||||| |
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|
| T |
35841419 |
atgagttatgaaatcggtttttacagagtggagtatgagaacggtgtttttgaggatttggatagtagcgctattcgtagaattctcattgaggattgcg |
35841320 |
T |
|
| Q |
202 |
attttgattaagatttaattcgacgaaagaatgaattggatcaat |
246 |
Q |
| |
|
|||| || | ||||| |||||| |||||||||||||||| |||| |
|
|
| T |
35841319 |
atttcgacgatgatttgattcgaagaaagaatgaattggaacaat |
35841275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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