View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18599_high_12 (Length: 390)
Name: NF18599_high_12
Description: NF18599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18599_high_12 |
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Alignment Details
Target: chr5 (Bit Score: 285; Significance: 1e-160; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 9 - 371
Target Start/End: Complemental strand, 41791722 - 41791359
Alignment:
| Q |
9 |
acatcatcataaatgaaaggttcctgaaatttggaaaaaataaataaattttgggtgcaaatacaatttttaaatgacatcttttggaatatctcctatc |
108 |
Q |
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|||| ||||||||||||||||||||||| ||||||||| | | | |||||||| |||||||||| |||||||||||||||||||||||||||||||| |
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| T |
41791722 |
acataatcataaatgaaaggttcctgaactttggaaaaga-attttttttttgggttcaaatacaatatttaaatgacatcttttggaatatctcctatc |
41791624 |
T |
|
| Q |
109 |
ataaggtatattt-cacatttattt-ttctagcttcttggacaataactcattctcctttgtagggcattttcgtactctttaggatctgggatgcaaaa |
206 |
Q |
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||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
41791623 |
ataaggtatattttcacatttatttattttagcttcttggacaataactcattctcctttgtagggcattttcgtactctttgggatctgggatgcaaaa |
41791524 |
T |
|
| Q |
207 |
tcagggagattaccaacatactgacatacatgattaatgcacttgataattaataacttgttcaaagattttggacaatcgtcatcaattacacattgaa |
306 |
Q |
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| T |
41791523 |
tcagggagattaccaacatactgacatacatgattaatgcacttgataattaataacttgttcaaagattttggacaatcgtcatcaattacacattgaa |
41791424 |
T |
|
| Q |
307 |
tatgttctgtaatgaaaagagatgatagcataatgttactaaaacattatcaaatattgtgtacg |
371 |
Q |
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| T |
41791423 |
tatgttctgtaatgaaaagagatgataacataatgttactaaaacattatcaaatattatgtacg |
41791359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 69 - 369
Target Start/End: Complemental strand, 41780241 - 41779943
Alignment:
| Q |
69 |
atacaatttttaaatgacatcttttggaatatctcctatcataaggtatatttcacatttatttttctagcttcttggacaataactcattctcctttgt |
168 |
Q |
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||||||| |||||||||||||||||||||||| |||||||||||||||||| ||||||||| || |||||||||||||||||| ||||||||||||| |
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| T |
41780241 |
atacaatatttaaatgacatcttttggaatatt--ctatcataaggtatattttacatttattattttagcttcttggacaataaatcattctcctttgc |
41780144 |
T |
|
| Q |
169 |
agggcattttcgtactctttaggatctgggatgcaaaatcagggagattaccaacatactgacatacatgattaatgcacttgataattaataacttgtt |
268 |
Q |
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|||||||||| ||||||| | ||||| || ||||||||||||||||||| | |||||||||||| |||| |||||||||||||| | ||||||||| |
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| T |
41780143 |
agggcatttttgtactctctgagatctcagacgcaaaatcagggagattacgagcatactgacatatgtgatcaatgcacttgataactcttaacttgtt |
41780044 |
T |
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| Q |
269 |
caaagattttggacaatcgtcatcaattacacattgaatatgttctgtaatgaaaagagatgatagcataatgttactaaaacattatcaaatattgtgt |
368 |
Q |
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|| || ||||||||||||||||||| ||||||| ||| ||| ||||||||||||||||||||| ||||||||||||||||||||| ||| ||||||| |
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| T |
41780043 |
cacaggttttggacaatcgtcatcagttacacacggaaaatgcgctgtaatgaaaagagatgataacataatgttactaaaacattagaaaagattgtgt |
41779944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 137 - 342
Target Start/End: Complemental strand, 41785739 - 41785531
Alignment:
| Q |
137 |
agcttcttggacaataactcattctcctttgtagggcattttcgtactctttaggatctgggatgcaaaatcagggag---attaccaacatactgacat |
233 |
Q |
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||||||||||| |||||||||||||| ||| ||||||||| ||||||| | | ||||||||||||||||||||| | |||| | |||||| |||| |
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| T |
41785739 |
agcttcttggataataactcattctcttttacggggcatttttgtactctctggaatctgggatgcaaaatcagggcgataattataaccatactcacat |
41785640 |
T |
|
| Q |
234 |
acatgattaatgcacttgataattaataacttgttcaaagattttggacaatcgtcatcaattacacattgaatatgttctgtaatgaaaagagatgata |
333 |
Q |
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| || | ||||||||||| || | ||| | ||||| || |||||||||| |||||||| |||||| |||| | ||||||||||||||||||| || |
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| T |
41785639 |
atgtgttcaatgcacttgacaactcttaaatggttcacaggttttggacaaccgtcatcagttacacgctgaaaaacctctgtaatgaaaagagatggta |
41785540 |
T |
|
| Q |
334 |
gcataatgt |
342 |
Q |
| |
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|||||||| |
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| T |
41785539 |
acataatgt |
41785531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 134
Target Start/End: Complemental strand, 41786863 - 41786739
Alignment:
| Q |
14 |
atcataaatgaaaggttcctgaaatttggaaaa-aataaataaa-----ttttgggtgcaaatacaatttttaaatgacatcttttggaatatctcctat |
107 |
Q |
| |
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||||||||||||||||||||||| || |||||| || |||||| |||||||| ||||||| |||| ||||||||||||| ||||| |||| |
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| T |
41786863 |
atcataaatgaaaggttcctgaagttaggaaaagaaaaaataataacttttttgggtatccatacaatatttagatgacatcttttgaaatatt--ctat |
41786766 |
T |
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| Q |
108 |
cataaggtatatttcacatttattttt |
134 |
Q |
| |
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||||||||||||||||||||||||||| |
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| T |
41786765 |
cataaggtatatttcacatttattttt |
41786739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 230 - 329
Target Start/End: Original strand, 1681334 - 1681433
Alignment:
| Q |
230 |
acatacatgattaatgcacttgataattaataacttgttcaaagattttggacaatcgtcatcaattacacattgaatatgttctgtaatgaaaagagat |
329 |
Q |
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|||||| |||| |||||| || ||| |||||| |||||||| |||||||||||||| |||||| || |||||| ||||||| ||||||||||||||||| |
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| T |
1681334 |
acatacgtgatcaatgcatttaatagctaataagttgttcaaggattttggacaatcatcatcagtttcacatttaatatgtgctgtaatgaaaagagat |
1681433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 9 - 139
Target Start/End: Original strand, 1681105 - 1681237
Alignment:
| Q |
9 |
acatcatcataaatgaaaggttcctgaaatttggaaaa---aataaataaatt--ttgggtgcaaatacaatttttaaatgacatcttttggaatatctc |
103 |
Q |
| |
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|||| ||||||||||||||||||| |||||| |||||| || |||| |||| |||||||| ||||||| |||||||||||| |||||||| | |
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| T |
1681105 |
acataatcataaatgaaaggttccggaaattaggaaaagaaaaaaaattaattatttgggtgcccatacaatatttaaatgacatattttggaaaa--at |
1681202 |
T |
|
| Q |
104 |
ctatcataaggtatatttcacatttatttttctagc |
139 |
Q |
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||||||| ||| |||||||||||||||||||||||| |
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| T |
1681203 |
ctatcat-aggcatatttcacatttatttttctagc |
1681237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 305 - 380
Target Start/End: Original strand, 1681443 - 1681518
Alignment:
| Q |
305 |
aatatgttctgtaatgaaaagagatgatagcataatgttactaaaacattatcaaatattgtgtacgaactgatga |
380 |
Q |
| |
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||||||| ||||||||||||||||| ||| ||||||||| ||||||| || ||| |||||||||||||| |||| |
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| T |
1681443 |
aatatgtgctgtaatgaaaagagataataaaataatgttatcaaaacatgataaaagattgtgtacgaacttatga |
1681518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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