View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18599_high_16 (Length: 360)
Name: NF18599_high_16
Description: NF18599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18599_high_16 |
 | |
|
| [»] scaffold0459 (1 HSPs) |
| | |
|
| [»] scaffold0366 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0459 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: scaffold0459
Description:
Target: scaffold0459; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 1 - 349
Target Start/End: Original strand, 3767 - 4115
Alignment:
| Q |
1 |
aaactgcatttgtaggacttgaattcacacggtaaaaatattttaaccgttcgattaatgaagatcggaagtctcttattctaacttcaccaagttgtgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3767 |
aaactgcatttgtaggacttgaattcacacggtaaaaatattttaaccgttcgattaatgaagatcggaagtctcttattctaacttcaccaagttgtgt |
3866 |
T |
|
| Q |
101 |
attcattcatattcataaggatgatgtaaaggaaataatgaatcgacccaggatttattggacaagttctgtaaatttattccatatattgtaacaaaaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3867 |
gttcattcatattcataaggatgatgtaaaggaaataatgaatcgacccaggatttattggacaagttctgtaaatttattccatatattgtaacaaaaa |
3966 |
T |
|
| Q |
201 |
gaatagcatagtggaagatattcatttgttaggtaggggttgattcacctacaattaacggttgcttcacattttcattcatgcctattaacaaaagcca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3967 |
gaatagcatagtggaagatattcatttgttaggtaggggttgattcacctacaattaacggttgcttcacattttcattcatgcctattaacaaaagcca |
4066 |
T |
|
| Q |
301 |
ttgcgcataatagaatgagttcatcaaataaatttttgagtggaagaag |
349 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4067 |
ttgcgcataatagaatgagttcatcaaataaatttttgagtggaagaag |
4115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0366 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: scaffold0366
Description:
Target: scaffold0366; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 1 - 349
Target Start/End: Original strand, 3767 - 4115
Alignment:
| Q |
1 |
aaactgcatttgtaggacttgaattcacacggtaaaaatattttaaccgttcgattaatgaagatcggaagtctcttattctaacttcaccaagttgtgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3767 |
aaactgcatttgtaggacttgaattcacacggtaaaaatattttaaccgttcgattaatgaagatcggaagtctcttattctaacttcaccaagttgtgt |
3866 |
T |
|
| Q |
101 |
attcattcatattcataaggatgatgtaaaggaaataatgaatcgacccaggatttattggacaagttctgtaaatttattccatatattgtaacaaaaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3867 |
gttcattcatattcataaggatgatgtaaaggaaataatgaatcgacccaggatttattggacaagttctgtaaatttattccatatattgtaacaaaaa |
3966 |
T |
|
| Q |
201 |
gaatagcatagtggaagatattcatttgttaggtaggggttgattcacctacaattaacggttgcttcacattttcattcatgcctattaacaaaagcca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3967 |
gaatagcatagtggaagatattcatttgttaggtaggggttgattcacctacaattaacggttgcttcacattttcattcatgcctattaacaaaagcca |
4066 |
T |
|
| Q |
301 |
ttgcgcataatagaatgagttcatcaaataaatttttgagtggaagaag |
349 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4067 |
ttgcgcataatagaatgagttcatcaaataaatttttgagtggaagaag |
4115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University