View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18599_high_22 (Length: 308)

Name: NF18599_high_22
Description: NF18599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18599_high_22
NF18599_high_22
[»] chr5 (1 HSPs)
chr5 (1-290)||(13234258-13234547)


Alignment Details
Target: chr5 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 290
Target Start/End: Complemental strand, 13234547 - 13234258
Alignment:
Q  1 aggaagaagtatataaatgggcctctaagttctaaagcaaaccaaacaatggcagcataggctaaagcttggagcgcaagaaacggcatgtgagtgatta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13234547 aggaagaagtatataaatgggcctctaagttctaaagcaaaccaaacaatggcagcataggctaaagcttggagcgcaagaaacggcatgtgagtgatta 13234448  T
Q  101 ggctagctatggtgtaacaagaagctctataggcattatgagaagtttcgcggatgaagatgaacctctcttggatgaaggcagggaccgcatcatttga 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  13234447 ggctagctatggtgtaacaagaagctctataggcattatgagaagtttcgcggatgaagatgaacctctcttggatgaaggcagggacggcatcatttga 13234348  T
Q  201 agagaagaaaaacagacacactgtgaaaatgaagaaactgagacgatttgtgattccttgtaaggtattttttggattgtggaacattgt 290  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13234347 agagaagaaaaacagacacactgtgaaaatgaagaaactgagacgatttgtgattccttgtaaggtattttttggattgtggaacattgt 13234258  T

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