View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18599_high_26 (Length: 292)
Name: NF18599_high_26
Description: NF18599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18599_high_26 |
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Alignment Details
Target: chr2 (Bit Score: 220; Significance: 1e-121; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 14 - 276
Target Start/End: Complemental strand, 40026985 - 40026720
Alignment:
| Q |
14 |
ttctgatcggaaagttttattggttgactggttgctacttgtttctaaagttaagcaagcattgaaacaaggcattgagagcgaaaaaagaaagagacta |
113 |
Q |
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| T |
40026985 |
ttctgatcggaaagtttgattggttgactggttgctacttgtttctaaagttaagcaagcattgaaacaatgcattgagagcgaaaaaagaaagagacta |
40026886 |
T |
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| Q |
114 |
agtaatatattaaccatttttcgttgtgtgga---tgattagaaacaaggcaaagggaccgatgatatatatactggtctaaaaatcaggaatatttttt |
210 |
Q |
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| T |
40026885 |
agtaatatattaaccatttttcgttgtgtggatgatgattagaaacaaggcaaagggaccgatgatatatatactggtctaaaaatcaggaatatttttt |
40026786 |
T |
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| Q |
211 |
tattttctgaggtggaatgnnnnnnnngttatgtttcgtggaaatacgatctcgaaggaactattt |
276 |
Q |
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| T |
40026785 |
tattttctgaggtggaatgttttttttgttatgtttcgtggaaatacgatctcgaaggaactattt |
40026720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 49 - 134
Target Start/End: Original strand, 30910751 - 30910836
Alignment:
| Q |
49 |
tacttgtttctaaagttaagcaagcattgaaacaaggcattgagagcgaaaaaagaaagagactaagtaatatattaaccattttt |
134 |
Q |
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| T |
30910751 |
tacttgtttctgaagctaagcaagcaacgaaacaatgcattgagagagagaaaagaaatagaccatgtaatagattaaccattttt |
30910836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 143
Target Start/End: Original strand, 30920135 - 30920267
Alignment:
| Q |
14 |
ttctgatcggaaagttttattggttgactggttgctacttgtttctaaagttaagcaa---gcattgaaacaaggcattgagagcgaaaaaagaaagaga |
110 |
Q |
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| T |
30920135 |
ttctgatcggaaagtttgattggctaacggatggttgcttgtttctgaagctaagcaataagcaacgaaacaatgcattgagagacaaagaagaaagaga |
30920234 |
T |
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| Q |
111 |
ctaagtaatatattaaccatttttcgttgtgtg |
143 |
Q |
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| T |
30920235 |
ccatataatagattaaccatttttgcttgtgtg |
30920267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 65 - 111
Target Start/End: Complemental strand, 22880441 - 22880395
Alignment:
| Q |
65 |
taagcaagcattgaaacaaggcattgagagcgaaaaaagaaagagac |
111 |
Q |
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| T |
22880441 |
taagcaagcaacgaaacaatgcattgagagcaaaaaaagaaagagac |
22880395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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