View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18599_high_28 (Length: 284)
Name: NF18599_high_28
Description: NF18599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18599_high_28 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 258; Significance: 1e-144; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 19 - 284
Target Start/End: Complemental strand, 33743022 - 33742757
Alignment:
| Q |
19 |
atatgtccacaaaaagtaaaacaatcaccaaacatgcatcttagctatatttaaaaaggtgtatctatctacattcgaaatccaacattcagatataatt |
118 |
Q |
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| T |
33743022 |
atatgtccacaaaaagtaaaacaatcaccaaacatgcatcttagctatatttaaaaaggtgtatctatctacattcgaaatccaacattcagatataatt |
33742923 |
T |
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| Q |
119 |
ctagcgatactcgaaacaatctcttgcgtcgtctcgtctctcacatctgatcttgtctctgcttcatttcctacaataataaaccaaaaatgattattaa |
218 |
Q |
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| T |
33742922 |
ctagcgatactcgaaacaatctcctgcgtcgtctcgtctctcacatctgatcttgtctttgcttcatttcctacaataataaaccaaaaatgattattaa |
33742823 |
T |
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| Q |
219 |
agaatgttgtcccatttgaaactagtataaatgaaaaatgattattaatttgagcagaatatgaat |
284 |
Q |
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| T |
33742822 |
agaatgttgtcccatttgaaactagtataaatgaaaaatgattattaatttgagcagaatatgaat |
33742757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 221 - 284
Target Start/End: Complemental strand, 33737684 - 33737621
Alignment:
| Q |
221 |
aatgttgtcccatttgaaactagtataaatgaaaaatgattattaatttgagcagaatatgaat |
284 |
Q |
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| T |
33737684 |
aatgctgtcccatttgaaacaaatataaatgaaaaatgagtattaatttgatttgaatatgaat |
33737621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 226 - 278
Target Start/End: Complemental strand, 33732994 - 33732942
Alignment:
| Q |
226 |
tgtcccatttgaaactagtataaatgaaaaatgattattaatttgagcagaat |
278 |
Q |
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| T |
33732994 |
tgtcacatttgaaactaatatagatgaaaaatgagtattaatttgatcagaat |
33732942 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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