View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18599_high_32 (Length: 265)
Name: NF18599_high_32
Description: NF18599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18599_high_32 |
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Alignment Details
Target: chr3 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 19 - 255
Target Start/End: Complemental strand, 50804953 - 50804717
Alignment:
| Q |
19 |
ttctggaaggagatttcagggctgctcttcaggggaatgaaattgagatttgtgtcgaaagtggtatgtactcttcgaacaacacaacagacaatcataa |
118 |
Q |
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| T |
50804953 |
ttctggaaggagatttcagggctgctcttcaggggaatgaaattgagatttgtgttgaaagtggtatgtactcttcgaacaacacaacagacaatcataa |
50804854 |
T |
|
| Q |
119 |
atttgttagtattttttgtctgtgtaaattgtgtagtctctgctcacaatggtagaaacaaatccccggagttgggtaggaccacaatgccgagactaat |
218 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50804853 |
atttgttagtattttttgtctgtgtaaatcgtgtagtctctgctcacaatggtagaaacaaatccccggagttgggtaggaccacaatgccgagactaat |
50804754 |
T |
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| Q |
219 |
gtatgttatgtatgattgtaggatgtcctgatgatgt |
255 |
Q |
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| T |
50804753 |
gtatgttatgtatgattgtaggatgtcctgatgatgt |
50804717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 19 - 255
Target Start/End: Original strand, 50870924 - 50871160
Alignment:
| Q |
19 |
ttctggaaggagatttcagggctgctcttcaggggaatgaaattgagatttgtgtcgaaagtggtatgtactcttcgaacaacacaacagacaatcataa |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50870924 |
ttctggaaggagatttcagggctgctcttcaggggaatgaaattgagatttgtgttgaaagtggtatgtactcttcgaacaacacaacagacaatcataa |
50871023 |
T |
|
| Q |
119 |
atttgttagtattttttgtctgtgtaaattgtgtagtctctgctcacaatggtagaaacaaatccccggagttgggtaggaccacaatgccgagactaat |
218 |
Q |
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| T |
50871024 |
atttgttagtattttttgtctgtgtaaatcgtgtagtctctgctcacaatggtagaaacaaatccccggagttgggtaggaccacaatgccgagactaat |
50871123 |
T |
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| Q |
219 |
gtatgttatgtatgattgtaggatgtcctgatgatgt |
255 |
Q |
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| T |
50871124 |
gtatgttatgtatgattgtaggatgtcctgatgatgt |
50871160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 19 - 251
Target Start/End: Original strand, 19057235 - 19057467
Alignment:
| Q |
19 |
ttctggaaggagatttcagggctgctcttcaggggaatgaaattgagatttgtgtcgaaagtggtatgtactcttcgaacaacacaacagacaatcataa |
118 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19057235 |
ttctggaaggagatttcagggctgctcttcaggggaatgaaattgagatttgtgtcgaaagtggtatgtactcttcgaacaacacaacagacaatcataa |
19057334 |
T |
|
| Q |
119 |
atttgttagtattttttgtctgtgtaaattgtgtagtctctgctcacaatggtagaaacaaatccccggagttgggtaggaccacaatgccgagactaat |
218 |
Q |
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||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |
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| T |
19057335 |
atttgttagtattttttgtctgtgtaaatcgtgtattctctgctcacaatggtagaaacaaatccccggagttaggtaggaccacaatgccaagactaat |
19057434 |
T |
|
| Q |
219 |
gtatgttatgtatgattgtaggatgtcctgatg |
251 |
Q |
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| T |
19057435 |
gtatgttatgtgtgattgtaggatgtcctgatg |
19057467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 22 - 94
Target Start/End: Original strand, 42348968 - 42349049
Alignment:
| Q |
22 |
tggaaggagatttcagggctgctcttcaggggaatg---------aaattgagatttgtgtcgaaagtggtatgtactcttc |
94 |
Q |
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||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||| |
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| T |
42348968 |
tggaaggagatttcagggctgttcttcaggggaatgatcaaaatgaaattgagatttgtgtcgaaagtggtatgcactcttc |
42349049 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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