View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18599_high_4 (Length: 671)

Name: NF18599_high_4
Description: NF18599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18599_high_4
NF18599_high_4
[»] chr8 (1 HSPs)
chr8 (13-653)||(30242268-30242908)


Alignment Details
Target: chr8 (Bit Score: 589; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 589; E-Value: 0
Query Start/End: Original strand, 13 - 653
Target Start/End: Original strand, 30242268 - 30242908
Alignment:
Q  13 tggacatcatcgaaaacgacactccaatatgagagtaaaacaagacctaaccataaacaattacgaatgctgttccttaaaccatagatgaaatataaaa 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30242268 tggacatcatcgaaaacgacactccaatatgagagtaaaacaagacctaaccataaacaattacgaatgctgttccttaaaccatagatgaaatataaaa 30242367  T
Q  113 ctttttctcttagcatgaagtttctttcgataaagaaaacggtgaaactaactaaccaacttgaaaacaaacggccactaaatgttaccattgccattaa 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30242368 ctttttctcttagcatgaagtttctttcgataaagaaaacggtgaaactaactaaccaacttgaaaacaaacggccactaaatgttaccattgccattaa 30242467  T
Q  213 acaccatctccaaacctctaaccctaataaatgcatgtttgttattcctcttattgtgacagaacaaaccaaacatgttaatatgtttagaaatagtatc 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  30242468 acaccatctccaaacctctaaccctaataaatgcatgtttgttattcctcttattgtgacagaacaaaccaaacatgttaatatgtttagaaataatatc 30242567  T
Q  313 cattcaaaaacaagtctccactttactttaaannnnnnnnnnnngttgcgtgacttcgaatcacgcaaaacctcttcatcctcatcctctgattcttctt 412  Q
    ||||||||||||||||||||||||||||||||            |||| |||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  30242568 cattcaaaaacaagtctccactttactttaaattttttctttttgttgtgtgacttcgaatcacgcaaaacctcttcgtcctcatcctctgattcttctt 30242667  T
Q  413 cctggtattcatagtcgctgtcatcttcgacatcggaagagatcttgtatataggtaattgagtgtcttcttcttcagaggtaggtagtttgttgcgagg 512  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30242668 cctggtattcatagtcgctgtcatcttcgacatcggaagagatcttgtatataggtaattgagtgtcttcttcttcagaggtaggtagtttgttgcgagg 30242767  T
Q  513 tggatggttgtattcaaggattcgagatttgggtttggaaaagcttagacgggtaagggtttttgctcttgagggatgtttaggcttctcttgataaggt 612  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  30242768 tggatggttgtattcaaggattcgagatttgggtttggaaaagcttagacgggtaagggtttttgctcttgagggatgtttaggcttctcttgatgaggt 30242867  T
Q  613 tcagtgtagtggtgagtttcagtgtccatagtagaaggttt 653  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  30242868 tcagtgtagtggtgagtttcagtgtccatagtagaaggttt 30242908  T

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