View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18599_high_46 (Length: 231)
Name: NF18599_high_46
Description: NF18599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18599_high_46 |
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Alignment Details
Target: chr3 (Bit Score: 168; Significance: 3e-90; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 18 - 214
Target Start/End: Complemental strand, 1628855 - 1628651
Alignment:
| Q |
18 |
agtatgtccatgcgcgagactcgtgcgtgtttttgaaggtttggaaacaagtttgaggatcaacaccgcagcttatgtatttctcttccgtcctttgaat |
117 |
Q |
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| T |
1628855 |
agtatgtccatgcgcgagactcgtgcgtgtttttgaaggtttggaaacaagtttgaggatcaacaccgcaacttatgtatttcgcttccgtcctttgaat |
1628756 |
T |
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| Q |
118 |
tatgttgtttatgacagtt--------atcatgtgtaactaaactttcataaattaggattgaatgatgaacatttttgtaatggttggaaccacatgac |
209 |
Q |
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| T |
1628755 |
tatgttgtttatgacagttatcaagttatcatgtgtaactaaactttcataaattaggattgaatgatgaacatttttgtaatggttggaaccacatgac |
1628656 |
T |
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| Q |
210 |
ctatg |
214 |
Q |
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||||| |
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| T |
1628655 |
ctatg |
1628651 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 20 - 82
Target Start/End: Original strand, 10821806 - 10821868
Alignment:
| Q |
20 |
tatgtccatgcgcgagactcgtgcgtgtttttgaaggtttggaaacaagtttgaggatcaaca |
82 |
Q |
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| T |
10821806 |
tatgtccatgcgcgagactcgtgcatgtttttgaaggtttggaaacaagtttgaggatcaaca |
10821868 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 135 - 204
Target Start/End: Original strand, 37545197 - 37545266
Alignment:
| Q |
135 |
ttatcatgtgtaactaaactttcataaattaggattgaatgatgaacatttttgtaatggttggaaccac |
204 |
Q |
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| T |
37545197 |
ttatcatgtgtatctaaactttaatagattatgattgaatgatgaacctttatgtaatggttgaaaccac |
37545266 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 49 - 200
Target Start/End: Original strand, 29413160 - 29413317
Alignment:
| Q |
49 |
tttgaaggtttggaaacaagtttgaggatcaacaccgcagcttatgtatttctcttccgtcctttgaattatgttgtttatgacagttat------catg |
142 |
Q |
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| T |
29413160 |
tttgaaggcttgaaaacaagtttaaagatctacacatgtgtttatgtatttctcttccactctttaaattatgttgtttattacactgattggaatcaag |
29413259 |
T |
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| Q |
143 |
tgtaactaaactttcataaattaggattgaatgatgaacatttttgtaatggttggaa |
200 |
Q |
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| T |
29413260 |
tgtaactaaactttcatattttatgattgaatgataaacaattatgtaatggttggaa |
29413317 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 134 - 181
Target Start/End: Complemental strand, 7674242 - 7674195
Alignment:
| Q |
134 |
gttatcatgtgtaactaaactttcataaattaggattgaatgatgaac |
181 |
Q |
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| T |
7674242 |
gttatcatgtgtaactaaactctcgtagattaggattgaatgatgaac |
7674195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 111 - 180
Target Start/End: Original strand, 8320002 - 8320071
Alignment:
| Q |
111 |
tttgaattatgttgtttatgacagttatcatgtgtaactaaactttcataaattaggattgaatgatgaa |
180 |
Q |
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|||||| | |||||||||| || ||||| ||||||||||||| |||||||||| |||||||||||||| |
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| T |
8320002 |
tttgaactttgttgtttattactagtatcacgtgtaactaaactctcataaattatgattgaatgatgaa |
8320071 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 134 - 181
Target Start/End: Complemental strand, 36296257 - 36296210
Alignment:
| Q |
134 |
gttatcatgtgtaactaaactttcataaattaggattgaatgatgaac |
181 |
Q |
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| T |
36296257 |
gttattatgtgtaactaaactctcatagattaggattgaatcatgaac |
36296210 |
T |
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