View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18599_high_8 (Length: 507)
Name: NF18599_high_8
Description: NF18599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18599_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 183; Significance: 9e-99; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 183; E-Value: 9e-99
Query Start/End: Original strand, 7 - 231
Target Start/End: Original strand, 29259810 - 29260032
Alignment:
| Q |
7 |
gcaaaagagaaatgtatttattttttgagagaaaaagaggaatgtattaattgatcatgacagatggtaagtagcagccataaatgtgtaacccttcttc |
106 |
Q |
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| T |
29259810 |
gcaaaagagaaatgtatttattttttgagagaaaaagagaaatgtattaattgatcatgacagatggtaagtagcagccataaa--tgtaacccttcttc |
29259907 |
T |
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| Q |
107 |
atgtctatgtaataaacatacggtggataga-taaaaacttatagtgggaccatgtaatgtatacactttgttttgccgtatcaatttgataatccattt |
205 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || || |
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| T |
29259908 |
atgtctatgtaataaacatacggtggatagattaaaaacttatagtgggaccatgtaatgcatacactttgttttgccgtatcaatttgataat-cactt |
29260006 |
T |
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| Q |
206 |
tattgatcgcactaaataagaaaatt |
231 |
Q |
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|||||||||||| ||||||||||||| |
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| T |
29260007 |
tattgatcgcacgaaataagaaaatt |
29260032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 347 - 491
Target Start/End: Original strand, 29260226 - 29260370
Alignment:
| Q |
347 |
aatggaaaattttcaactctttcaaaaccaaaccattctaatctttgaacttttagggctttgacgtgtaactagtatgcacccaccaaagtatcattgc |
446 |
Q |
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| T |
29260226 |
aatggaaactttttaactctttcaaaaccaaaccattctaatctttgaacttttagggctttgacgtgtaactagtatgcacccaccaaagtatcattgc |
29260325 |
T |
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| Q |
447 |
acttaattacttgcattgttgtgtgactagctggcatcttctatt |
491 |
Q |
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| T |
29260326 |
acttaattacttgcattgttgtgtgactaactggcatcttctatt |
29260370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 289 - 343
Target Start/End: Original strand, 29260080 - 29260134
Alignment:
| Q |
289 |
gttgaaccaatttaaaaggtgattgttctatcttaaaaatatcagctagagttaa |
343 |
Q |
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| T |
29260080 |
gttgaaccaatttaaaaagtgattgatccatcttaaaaatatcaacgagagttaa |
29260134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 347 - 399
Target Start/End: Original strand, 7209002 - 7209054
Alignment:
| Q |
347 |
aatggaaaattttcaactctttcaaaaccaaaccattctaatctttgaacttt |
399 |
Q |
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| T |
7209002 |
aatggaaaattttcatctctttcaaaaccaaaccattcttagctttgaacttt |
7209054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 220 - 258
Target Start/End: Complemental strand, 9945731 - 9945693
Alignment:
| Q |
220 |
aataagaaaattactctacttctttttaaaattgttcat |
258 |
Q |
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| T |
9945731 |
aataagataattactctactcctttttaaaattgttcat |
9945693 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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