View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18599_low_1 (Length: 696)
Name: NF18599_low_1
Description: NF18599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18599_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 206; Significance: 1e-112; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 231 - 476
Target Start/End: Complemental strand, 15450276 - 15450031
Alignment:
| Q |
231 |
aattttaacttctctttaagaatgtgagccatccaccttgtagtttacaaggaggcctaattgagaatgaccatattatgtaatcctttatcagccatcc |
330 |
Q |
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| T |
15450276 |
aattttaacttctctttaagaatgtgagccatccaccttgtagtttacaaggaggcctaattgagaatgaccatattatgtaatcctttctcagccatcc |
15450177 |
T |
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| Q |
331 |
gaaagttattgaatataaacaaccttaggccccgatgttgggaagagtagtgaatgaccaagggataatcgtccgagacatcatgggggaggcttcggtg |
430 |
Q |
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| T |
15450176 |
ggaagatattgaatataaacaaccttaggccccgatgttaggaagagtagcgaatgaccaagggacaatcgtccgagacatcatgggggaggcttcgttg |
15450077 |
T |
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| Q |
431 |
actcataattgtcgcacttatcccacaatccttagaacacgagaat |
476 |
Q |
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| T |
15450076 |
actcatagctgtcgcacctatcccacaatccttagaacacgagaat |
15450031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 16 - 234
Target Start/End: Complemental strand, 15450864 - 15450646
Alignment:
| Q |
16 |
cataggccttttcgcattccaccttaaaaatcagatacaccctcctagaattttgagccaggtcaatgaattcataacaacgaccactccatcaaccaga |
115 |
Q |
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| T |
15450864 |
cataggccttttcgaattccaccttaaaaatcatatacaccctcctagaatttcgagccaggtcaatgaattcagaacaacgaccactccatcaaccaga |
15450765 |
T |
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| Q |
116 |
tacctccccttaattaaagtttactgattggtttaaataattttatccataattcctaccatccaacaacattgtcacgaacttatgaagagatccaaga |
215 |
Q |
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| T |
15450764 |
tacctccccctaattaaagtttactgattggtttaaataattttatccataattcctaacatcaaacaacattgtcacgaacttatgaagagatccaaga |
15450665 |
T |
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| Q |
216 |
agggaactaggatggaatt |
234 |
Q |
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| T |
15450664 |
agggaactaggatggaatt |
15450646 |
T |
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