View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18599_low_14 (Length: 383)
Name: NF18599_low_14
Description: NF18599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18599_low_14 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 17 - 383
Target Start/End: Original strand, 40381508 - 40381874
Alignment:
| Q |
17 |
agttagtatgtgctagttttgagccaattatgtgttagaattatattaacctttttgataattgaaatcagggtgctccattgaatgaatacacacttcg |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
40381508 |
agttagtatgtgctagttttgagccaattaagtgttagaattatattaacctttttgataattgaaaacagggtgctccattgaatgaatacacacttcg |
40381607 |
T |
|
| Q |
117 |
gttgattggttcagacatagagcattatataagaaagttgttatatgatggagtaatcaagtataatatgaatgcaagggttctgaatttcagcatgggg |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40381608 |
cttgattggttcagacatagagcattatataagaaagttgttatatgatggagtaatcaagtataatatgaatgcaagggttctgaatttcagcatgggg |
40381707 |
T |
|
| Q |
217 |
aagccacggatcatgttcaacaacaatgatatccaacctgaagatgcaagtactttagaaataatttgtgagacacaccaataaaagtgagcaaatcatt |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| |||||||||||||||||| |
|
|
| T |
40381708 |
aagccacggatcatgttcaacaacaatgatatccaacctgaagatgcaagtacttgagaaataatttgtgaaacacaccaagaaaagtgagcaaatcatt |
40381807 |
T |
|
| Q |
317 |
gatgttttttgtgtatgatgaatcagtcagatatgttattacaattactagttctttaatttgtaaa |
383 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40381808 |
gatgttttttgtgtatgatgaatcagtcagatatgttattacaattactagttctttaatttgtaaa |
40381874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University