View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18599_low_19 (Length: 347)
Name: NF18599_low_19
Description: NF18599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18599_low_19 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 285; Significance: 1e-160; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 17 - 343
Target Start/End: Complemental strand, 1455665 - 1455342
Alignment:
| Q |
17 |
atgtcacaggttattttgcgtacaatgtaaagttccatggcatgaaggactcaactgtcaacaatttcaacgaaaactagcatgctccaataaaacatac |
116 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
1455665 |
atgtcacatgttattttgcgtacaatgtaaagttccatggcatgaaggactcaactgtcaacaatttcaacgaaaactagcatgttccaataaaacatac |
1455566 |
T |
|
| Q |
117 |
atgattgttgattcccaaaacagtaccgttccaaagaagagaagttctccctttgaaggccgtgacaacgatgaaaagaagaaggctaagaagaaagacg |
216 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
1455565 |
atgattgttgattcccaaaaca---ccgttccaaagaagagaagttctccctttgaaggccgtgacaacgatgaaaagaagaaggcgaagaagaaagacg |
1455469 |
T |
|
| Q |
217 |
cgatcccagttgattctaaccaagcatcttatcaaaacttagtgaaagtgaattgcaatgaatttcaacaacaaaaatcaaaggagaaagcaaccgttga |
316 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
1455468 |
cgatcgcagttgattctaaccaagcatcttatcaaaacttagtgaaagtgaattgcaatgaatttcaacaacaaaaatcgaaggagaaagcaaccgttga |
1455369 |
T |
|
| Q |
317 |
gtccggttgtaaatgttcatctcagtc |
343 |
Q |
| |
|
||||||| ||||||||||||| ||||| |
|
|
| T |
1455368 |
gtccggtcgtaaatgttcatcacagtc |
1455342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 292
Target Start/End: Complemental strand, 1451754 - 1451709
Alignment:
| Q |
247 |
atcaaaacttagtgaaagtgaattgcaatgaatttcaacaacaaaa |
292 |
Q |
| |
|
||||||||| |||||||||||| || |||||||| ||||||||||| |
|
|
| T |
1451754 |
atcaaaactcagtgaaagtgaagtgtaatgaattccaacaacaaaa |
1451709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 33532361 - 33532321
Alignment:
| Q |
18 |
tgtcacaggttattttgcgtacaatgtaaagttccatggca |
58 |
Q |
| |
|
||||| ||||||||||| || |||||||||||||||||||| |
|
|
| T |
33532361 |
tgtcataggttattttgtgtgcaatgtaaagttccatggca |
33532321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 16868986 - 16869026
Alignment:
| Q |
18 |
tgtcacaggttattttgcgtacaatgtaaagttccatggca |
58 |
Q |
| |
|
||||| ||||||||||| || |||||||||||||||||||| |
|
|
| T |
16868986 |
tgtcataggttattttgtgtgcaatgtaaagttccatggca |
16869026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 38 - 70
Target Start/End: Original strand, 19314957 - 19314989
Alignment:
| Q |
38 |
acaatgtaaagttccatggcatgaaggactcaa |
70 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| |
|
|
| T |
19314957 |
acaatgtaaagttccatggcatgaaggattcaa |
19314989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University