View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18599_low_21 (Length: 324)

Name: NF18599_low_21
Description: NF18599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18599_low_21
NF18599_low_21
[»] chr2 (1 HSPs)
chr2 (19-315)||(9738378-9738674)


Alignment Details
Target: chr2 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 19 - 315
Target Start/End: Original strand, 9738378 - 9738674
Alignment:
Q  19 ataagacactattcacaaactatgtcttataaggttaatgttgcatttttcctatgtctcaatattattttcttcactatggtgaattgcaactatgtac 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9738378 ataagacactattcacaaactatgtcttataaggttaatgttgcatttttcctatgtctcaatattattttcttcactatggtgaattgcaactatgtac 9738477  T
Q  119 ctgaaatcccagtcccaatcccagacccaatatataacccttctccaaagggtacatgtcctatagatgcacttaagttaggtgtgtgtgcaaatttgtt 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9738478 ctgaaatcccagtcccaatcccagacccaatatataacccttctccaaagggtacatgtcctatagatgcacttaagttaggtgtgtgtgcaaatttgtt 9738577  T
Q  219 gaacttggtcaaagttaaattggggtccccaccaacactcccttgttgctcactcattcaaggtcttgctgatcttgaagctgctgcttgcctttgc 315  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9738578 gaacttggtcaaagttaaattggggtccccaccaacactcccttgttgctcactcattcaaggtcttgctgatcttgaagctgctgcttgcctttgc 9738674  T

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