View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18599_low_22 (Length: 322)
Name: NF18599_low_22
Description: NF18599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18599_low_22 |
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| [»] scaffold0036 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 11 - 304
Target Start/End: Original strand, 12789622 - 12789915
Alignment:
| Q |
11 |
cagagagaacaccgtaaccatctcaaaaacatgaaactagaccctgacttccgaactcaaagcaaaaacgatcgacacgccagaatctagactacaaatc |
110 |
Q |
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| T |
12789622 |
cagagagaacactgtaaccatctcaaaaacatgaaactagaccctgacttccaaactcaaagcaaaaacgatctgtccaccagaatctagactacaaatc |
12789721 |
T |
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| Q |
111 |
cctaagacatgtacagtaaacgggtgtccgacacttacaatttaaacacccaaaataatggtttgtcctctataacctttaaataatgacatttgaattg |
210 |
Q |
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| T |
12789722 |
cctaagacatgtacagtaaacgggtgtccgacacttacaatttaaacacccaaaataatggtttgtcctctataacctttaaataatgacatttgaattg |
12789821 |
T |
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| Q |
211 |
tagtgagccaatgcacctgtagcagttatatacaattttaaataacaatcaaatgcatattattagtatagtagattctatttttggtaaaagt |
304 |
Q |
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| T |
12789822 |
tagtgagccaatgtacctgtagcagttatatacaattttaaataacaatcaaatgcatattattagtatagtagattctatttttggtaaaagt |
12789915 |
T |
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Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 13 - 78
Target Start/End: Original strand, 15841027 - 15841092
Alignment:
| Q |
13 |
gagagaacaccgtaaccatctcaaaaacatgaaactagaccctgacttccgaactcaaagcaaaaa |
78 |
Q |
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| T |
15841027 |
gagaaaacaccttaaccatcacaaaaacttgaaactagacgctaacttccgatctcgaagcaaaaa |
15841092 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 86
Target Start/End: Original strand, 64413 - 64480
Alignment:
| Q |
19 |
acaccgtaaccatctcaaaaacatgaaactagaccctgacttccgaactcaaagcaaaaacgatcgac |
86 |
Q |
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| T |
64413 |
acaccttaaccatccaaaaaacatgaaactagacgtcaacttccgatctcaaagcaaaagcgatcgac |
64480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 86
Target Start/End: Original strand, 69554 - 69621
Alignment:
| Q |
19 |
acaccgtaaccatctcaaaaacatgaaactagaccctgacttccgaactcaaagcaaaaacgatcgac |
86 |
Q |
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| T |
69554 |
acaccttaaccatccaaaaaacatgaaactagacgtcaacttccgatctcaaagcaaaagcgatcgac |
69621 |
T |
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