View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18599_low_3 (Length: 676)
Name: NF18599_low_3
Description: NF18599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18599_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 121; Significance: 1e-61; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 5 - 165
Target Start/End: Complemental strand, 10538675 - 10538515
Alignment:
| Q |
5 |
attatactttggactcaatggagagacccctctgtcttttgaagagataggaaagttgttgaaactatcaagggagagaatcagacagattcatggcatt |
104 |
Q |
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| T |
10538675 |
attatactttggactcaatggagagacccctttgtcttttgaggagataggaaagctgttgaaactatcaagagagagaatcagacagattcatggcatt |
10538576 |
T |
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| Q |
105 |
gcattgtcaaaattgcaacaaaattcacttgtaaatagtctaaagttttatgttgtataga |
165 |
Q |
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| T |
10538575 |
gcattgtcaaaattgcgacaaaatactattgtagatagtctaaagttttatgttgtttaga |
10538515 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 5 - 165
Target Start/End: Complemental strand, 10683359 - 10683199
Alignment:
| Q |
5 |
attatactttggactcaatggagagacccctctgtcttttgaagagataggaaagttgttgaaactatcaagggagagaatcagacagattcatggcatt |
104 |
Q |
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| T |
10683359 |
attatactttggactcaatggagagacccctttgtcttttgaggagataggaaagctgttgaaactatcaagagagaggatcagacagattcatggtatt |
10683260 |
T |
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| Q |
105 |
gcattgtcaaaattgcaacaaaattcacttgtaaatagtctaaagttttatgttgtataga |
165 |
Q |
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| T |
10683259 |
gcattgtcaaaattggaacaaaatacccttgtagatagtctaaagttttatgttgtataga |
10683199 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 411 - 460
Target Start/End: Complemental strand, 11772916 - 11772867
Alignment:
| Q |
411 |
gaacatcaatctttatgttactcaaacaagttcccaatattaagaaccaa |
460 |
Q |
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| T |
11772916 |
gaacatcaatctttatgttactcaaacaagttgccaatatttagaaccaa |
11772867 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 412 - 460
Target Start/End: Original strand, 11778496 - 11778544
Alignment:
| Q |
412 |
aacatcaatctttatgttactcaaacaagttcccaatattaagaaccaa |
460 |
Q |
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| T |
11778496 |
aacatcaatctttatgttactcaaacaagttgccaatatttagaaccaa |
11778544 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 402 - 451
Target Start/End: Complemental strand, 10681826 - 10681777
Alignment:
| Q |
402 |
atgcatcaggaacatcaatctttatgttactcaaacaagttcccaatatt |
451 |
Q |
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| T |
10681826 |
atgcatcaggaacaccaatcattatgttacacaaacaagtttccaatatt |
10681777 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 609 - 658
Target Start/End: Complemental strand, 10521692 - 10521643
Alignment:
| Q |
609 |
tacaaacccttctgtgcatagtattgaagaatatacaaagatgaagtcaa |
658 |
Q |
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| T |
10521692 |
tacaaaccctgttgtgcatagtattgaaaaatattcaaaggtgaagtcaa |
10521643 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 489 - 537
Target Start/End: Complemental strand, 10093338 - 10093290
Alignment:
| Q |
489 |
cttcaacttgttccatttatgtatgcttcatgatgccacatacaaacaa |
537 |
Q |
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| T |
10093338 |
cttctacttgttccatttatttatgcttcatgtttccacatactaacaa |
10093290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 489 - 537
Target Start/End: Complemental strand, 10200220 - 10200172
Alignment:
| Q |
489 |
cttcaacttgttccatttatgtatgcttcatgatgccacatacaaacaa |
537 |
Q |
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| T |
10200220 |
cttctacttgttccatttatttatgcttcatgtttccacatactaacaa |
10200172 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 416 - 459
Target Start/End: Complemental strand, 26910739 - 26910696
Alignment:
| Q |
416 |
tcaatctttatgttactcaaacaagttcccaatattaagaacca |
459 |
Q |
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| T |
26910739 |
tcaatctttatgttactcaaacaagtttccaatatttagaacca |
26910696 |
T |
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