View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18599_low_32 (Length: 269)
Name: NF18599_low_32
Description: NF18599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18599_low_32 |
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Alignment Details
Target: chr6 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 18 - 257
Target Start/End: Complemental strand, 13212217 - 13211978
Alignment:
| Q |
18 |
atacctacattaaaagagatatggatcgaatatgagtttataagtaggcaatcatcacgatacaagttaattttgtaaggttaagttaggaccaatccaa |
117 |
Q |
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| T |
13212217 |
atacctacattaaaagagatatggatcgaatatgagtttataagtaggcaatcatcacgatacaagttaattttgtaaggttaagttaggaccaatccaa |
13212118 |
T |
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| Q |
118 |
attttacgatcttatcatagtctatccatgatccgtttggacacttgctattaggtttccgctatcgggtcaatctgataacgctctggatgtctagtcc |
217 |
Q |
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| T |
13212117 |
attttacgatcttatcatagtctatccacgatccgtttggacacttgctattaggtttccgctatcggatcaatctgattacgctctggatatctagtac |
13212018 |
T |
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| Q |
218 |
taggtacgagagtatgtgttaagagtccctactttgatga |
257 |
Q |
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| T |
13212017 |
taggtacgagagtatgtgttaagagtccctaatttgatga |
13211978 |
T |
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Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 142 - 189
Target Start/End: Original strand, 31150945 - 31150992
Alignment:
| Q |
142 |
tccatgatccgtttggacacttgctattaggtttccgctatcgggtca |
189 |
Q |
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| T |
31150945 |
tccaagatccgttgggccacttgctattaggtttccgttatcgggtca |
31150992 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 182
Target Start/End: Original strand, 35018522 - 35018616
Alignment:
| Q |
89 |
tttgtaaggttaagttaggaccaatc-caaattttacgatcttatcatagtctatccatgatccgtttggacacttgctattaggtttccgctat |
182 |
Q |
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| T |
35018522 |
tttgtaaggtcgagttaggcccaaccacaaattctaagatgatatcagagcctatccaagatccgttgggtcacttgctataaggtttccgctat |
35018616 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 78 - 150
Target Start/End: Original strand, 40571598 - 40571669
Alignment:
| Q |
78 |
tacaagttaattttgtaaggttaagttaggaccaatccaaattttacgatcttatcatagtctatccatgatc |
150 |
Q |
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| T |
40571598 |
tacaagttggttttgtaaggttgagttaggcccaatccaaa-tttaagatggtatcaaagtctatccttgatc |
40571669 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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