View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18599_low_41 (Length: 245)
Name: NF18599_low_41
Description: NF18599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18599_low_41 |
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| [»] chr4 (5 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 159; Significance: 9e-85; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 62 - 245
Target Start/End: Original strand, 37606340 - 37606519
Alignment:
| Q |
62 |
tagctagtttaatgaactaagatactaggagaaaaataatatcttagtttccaatgcctagttggttgtcccccaaagaaaatatttgtagtatcaattt |
161 |
Q |
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| T |
37606340 |
tagctagtttaatgaactaagatactaggagaaaaataatatcttagtttccaatggctagttggttgtcccccaaagaaaatatttgtagtatcaattt |
37606439 |
T |
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| Q |
162 |
atacaaatgcaatggagattggtagcaagaaatcatatatatatctttggagaaggatctatatgtgggtatacaagagagttt |
245 |
Q |
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| T |
37606440 |
atacaaatgcaatggagattggtagcaagaaatc----atatatctttggagaaggatctatatgtgggtatgcaagagagttt |
37606519 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 137 - 242
Target Start/End: Original strand, 37600103 - 37600204
Alignment:
| Q |
137 |
aagaaaatatttgtagtatcaatttatacaaatgcaatggagattggtagcaagaaatcatatatatatctttggagaaggatctatatgtgggtataca |
236 |
Q |
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| T |
37600103 |
aagaaaatatttgtagtgtcaatttatacaaatgaaatggtgattcgtagcaagaaatc----atatatctttggaaaaggatctttatgtgagtataca |
37600198 |
T |
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| Q |
237 |
agagag |
242 |
Q |
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| T |
37600199 |
agagag |
37600204 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 153 - 201
Target Start/End: Original strand, 34750989 - 34751037
Alignment:
| Q |
153 |
tatcaatttatacaaatgcaatggagattggtagcaagaaatcatatat |
201 |
Q |
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| T |
34750989 |
tatcaatttatacaaatgctatggagattggtagcaagaaatcatatat |
34751037 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 37605890 - 37605935
Alignment:
| Q |
18 |
acttcatcctctcacccatccaggtccaacatcgcaaatctatcta |
63 |
Q |
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| T |
37605890 |
acttcatcatctcacccatccaggtccaacatcgcaaatctatcta |
37605935 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 20 - 63
Target Start/End: Complemental strand, 37606256 - 37606213
Alignment:
| Q |
20 |
ttcatcctctcacccatccaggtccaacatcgcaaatctatcta |
63 |
Q |
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| T |
37606256 |
ttcatcctctcacccatccaggtccaacatcacaaatctatcta |
37606213 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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