View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18599_low_43 (Length: 240)
Name: NF18599_low_43
Description: NF18599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18599_low_43 |
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Alignment Details
Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 14 - 221
Target Start/End: Original strand, 22552060 - 22552267
Alignment:
| Q |
14 |
cataggcatcaattgtttcagcttcctagtataatgtggctaataatcaagaaaccaaagagatttagcatcaactggttcataaattgggtaagaattt |
113 |
Q |
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| T |
22552060 |
cataggcatcaattgtttcagcttcctagtataatgtggctaataatcaagaaaccaaagagatttagcatcaactggttcataaattgggtaagaattt |
22552159 |
T |
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| Q |
114 |
ggaaattaatcatgtacatacccatattgtattcaactaatttgtgttttaatttcaggctgcaatatacattggtgtgtgcattatgctggcatccact |
213 |
Q |
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| T |
22552160 |
ggaaattaatcatgtacatacccatattatattcaactaatctgtgttttaatttcaggctgccatatacattggtgtgtgcattatgctggcatccact |
22552259 |
T |
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| Q |
214 |
gttggtgg |
221 |
Q |
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||||||| |
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| T |
22552260 |
attggtgg |
22552267 |
T |
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Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 24 - 107
Target Start/End: Complemental strand, 41890506 - 41890423
Alignment:
| Q |
24 |
aattgtttcagcttcctagtataatgtggctaataatcaagaaaccaaagagatttagcatcaactggttcataaattgggtaa |
107 |
Q |
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| T |
41890506 |
aattgtttcagcttcctagcataatgtggatgataatcaagaaaccaaagaaattcagcatcaactggttcatcaattgggtaa |
41890423 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 24 - 107
Target Start/End: Complemental strand, 41896108 - 41896025
Alignment:
| Q |
24 |
aattgtttcagcttcctagtataatgtggctaataatcaagaaaccaaagagatttagcatcaactggttcataaattgggtaa |
107 |
Q |
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| T |
41896108 |
aattatttcagcttcctagtataatgtggttgataatcaagaagccaaggagattcagtatcaattggttcatcaattgggtaa |
41896025 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 221
Target Start/End: Complemental strand, 41890368 - 41890298
Alignment:
| Q |
152 |
aatttgtgt-tttaatttcaggctgcaatatacattggtgtgtgcattatgctggcatccactgttggtgg |
221 |
Q |
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||||||||| ||| ||||||||||| ||| ||||| ||||| || |||||||||||||| || |||||||| |
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| T |
41890368 |
aatttgtgtcttttatttcaggctggaatttacataggtgtatgtattatgctggcatcaacagttggtgg |
41890298 |
T |
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