View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18599_low_47 (Length: 237)
Name: NF18599_low_47
Description: NF18599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18599_low_47 |
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Alignment Details
Target: chr5 (Bit Score: 201; Significance: 1e-110; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 17 - 225
Target Start/End: Complemental strand, 38390649 - 38390441
Alignment:
| Q |
17 |
aatgattatagcaaccattgtgcattggtcagtgaagttattatatgatccatcaagaaaatatgctggataccaaaaaaggaacatgatgagcttaaaa |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
38390649 |
aatgattatagcaaccattgtgcattggtcagtgaagttattatatgatccatcaagaaaatatgctggataccaaaaaaggaacatgatgcgcttaaaa |
38390550 |
T |
|
| Q |
117 |
agaaactcagagctaagaatactagtaacacttcaaaaacagaaccatatttcagcagcaacaaatttcctagacttatgttgtccaacacaagaaaaac |
216 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
38390549 |
agaaactcagagctaagaatactagtaacacttcaaaaacagaaccatatttcagcagcaacagatttcctagacttatgttgtccaacacaagaaaaac |
38390450 |
T |
|
| Q |
217 |
caatcacag |
225 |
Q |
| |
|
||||||||| |
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|
| T |
38390449 |
caatcacag |
38390441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 17 - 225
Target Start/End: Complemental strand, 38399403 - 38399195
Alignment:
| Q |
17 |
aatgattatagcaaccattgtgcattggtcagtgaagttattatatgatccatcaagaaaatatgctggataccaaaaaaggaacatgatgagcttaaaa |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
38399403 |
aatgattatagcaaccattgtgcattggtcagtgaagttattatatgatccatcaagaaaatatgctggataccaaaaaaggaatatgatgagcttaaaa |
38399304 |
T |
|
| Q |
117 |
agaaactcagagctaagaatactagtaacacttcaaaaacagaaccatatttcagcagcaacaaatttcctagacttatgttgtccaacacaagaaaaac |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
38399303 |
agaaactcagagctaagaatactagtaacacttcaaaaacagaaccatatttcagcagcaacagatttcctagacttatgttgtccaacacaagaaaaac |
38399204 |
T |
|
| Q |
217 |
caatcacag |
225 |
Q |
| |
|
||||||||| |
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|
| T |
38399203 |
caatcacag |
38399195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 17 - 225
Target Start/End: Complemental strand, 38381774 - 38381566
Alignment:
| Q |
17 |
aatgattatagcaaccattgtgcattggtcagtgaagttattatatgatccatcaagaaaatatgctggataccaaaaaaggaacatgatgagcttaaaa |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
38381774 |
aatgattatagcaaccattgtgcattggtcggtgaagttattatatgatccatcgagaaaatatgctggataccaaaaaaggaacatgatgggcttaaaa |
38381675 |
T |
|
| Q |
117 |
agaaactcagagctaagaatactagtaacacttcaaaaacagaaccatatttcagcagcaacaaatttcctagacttatgttgtccaacacaagaaaaac |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38381674 |
agaaactcagagctaagaatactagtaacacttcaaaaacagaaccatatttcagcagcaacaaatttcctagacttatgttgtccaacacaagaaaaac |
38381575 |
T |
|
| Q |
217 |
caatcacag |
225 |
Q |
| |
|
||||||||| |
|
|
| T |
38381574 |
caatcacag |
38381566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 48 - 127
Target Start/End: Original strand, 38582782 - 38582861
Alignment:
| Q |
48 |
gtgaagttattatatgatccatcaagaaaatatgctggataccaaaaaaggaacatgatgagcttaaaaagaaactcaga |
127 |
Q |
| |
|
|||||||| || ||||| || |||||||||||||| || || |||||||||||||| ||||||| ||| ||||||||| |
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|
| T |
38582782 |
gtgaagttcttgtatgacccttcaagaaaatatgcaggttatcaaaaaaggaacatcttgagcttgaaaccaaactcaga |
38582861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 17 - 224
Target Start/End: Original strand, 37840494 - 37840701
Alignment:
| Q |
17 |
aatgattatagcaaccattgtgcattggtcagtgaagttattatatgatccatcaagaaaatatgctggataccaaaaaaggaacatgatgagcttaaaa |
116 |
Q |
| |
|
||||||||| |||||||| |||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
37840494 |
aatgattattgcaaccatagtgcattggtcactgaagttattatatgatccatcgagaaaatatgctggataccaaaaaaggaacatgattagcttaaaa |
37840593 |
T |
|
| Q |
117 |
agaaactcagagctaagaatactagtaacacttcaaaaacagaaccatatttcagcagcaacaaatttcctagacttatgttgtccaacacaagaaaaac |
216 |
Q |
| |
|
| |||||||||||| |||||||| ||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||| |||| |
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| T |
37840594 |
aaaaactcagagctgagaatactcgtaacacttcaaaaacagaaccatatttcagcaacaacagatttcatagacttatgttgtccaacacaagagaaac |
37840693 |
T |
|
| Q |
217 |
caatcaca |
224 |
Q |
| |
|
|||||||| |
|
|
| T |
37840694 |
caatcaca |
37840701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 42 - 116
Target Start/End: Original strand, 5623469 - 5623543
Alignment:
| Q |
42 |
tggtcagtgaagttattatatgatccatcaagaaaatatgctggataccaaaaaaggaacatgatgagcttaaaa |
116 |
Q |
| |
|
||||| |||||| |||| ||||||||||||||||||||||| || ||||||||||||||||| ||||| |||||| |
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|
| T |
5623469 |
tggtctgtgaagatattgtatgatccatcaagaaaatatgccggctaccaaaaaaggaacatcatgagtttaaaa |
5623543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 42 - 116
Target Start/End: Complemental strand, 35298229 - 35298155
Alignment:
| Q |
42 |
tggtcagtgaagttattatatgatccatcaagaaaatatgctggataccaaaaaaggaacatgatgagcttaaaa |
116 |
Q |
| |
|
|||||||||||| |||| ||||||||||||||||||||||| || ||||| ||| ||||||| |||| |||||| |
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|
| T |
35298229 |
tggtcagtgaagatattgtatgatccatcaagaaaatatgccggctaccagaaacggaacatcgtgagtttaaaa |
35298155 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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