View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18599_low_5 (Length: 618)
Name: NF18599_low_5
Description: NF18599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18599_low_5 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 14 - 297
Target Start/End: Complemental strand, 16400959 - 16400676
Alignment:
| Q |
14 |
ttcttgtgctagttgaagattgaacaaatctcttagaattttctttttcatgttgatacaggtttcatattcacttttgatattcttttgtggaatgttt |
113 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16400959 |
ttcttgtgctagttgaagattgaacaaatatcttagaattttctttttcatgttgatacaggtttcatattcacttttgatattcttttgtggaatgttt |
16400860 |
T |
|
| Q |
114 |
atcacagtagatggattcaacaaaactggaattccaagtgctttatgggagttgatggagccttattcgcgagttgatcgttctagtggaatagcgatac |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16400859 |
atcacagtagatggattcaacaaaactggaattccaagtgctttatgggagttgatggagccttattcgcgagttgatcgttctagtggaatagcgatac |
16400760 |
T |
|
| Q |
214 |
ttgctcttgttatacttgtcctatcaaatttggcttcaaatgtaccaaccggtaagtgaatgattatcaggttctctgtggtta |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |||||| |
|
|
| T |
16400759 |
ttgctcttgttatacttgtcctatcaaatttggcttcaaatgtaccaaccggtaagtgaatgattatcagatcctctatggtta |
16400676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 468 - 562
Target Start/End: Complemental strand, 16400495 - 16400401
Alignment:
| Q |
468 |
ttatgttagagttgtgaaatagagtctggctgtccggttcaaccggaaataggctagtctggcggatggttgaaccaaggtcggttcacggtcct |
562 |
Q |
| |
|
||||||||| || |||||| ||| ||||||||| |||||| || |||||||| |||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
16400495 |
ttatgttagtgtggtgaaacagaacctggctgtctggttcagccagaaataggtcagtctggcggttggttgaaccaaggtcggttcacggtcct |
16400401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 10 - 285
Target Start/End: Original strand, 14306012 - 14306287
Alignment:
| Q |
10 |
attattcttgtgctagttgaagattgaacaaatctcttagaattttcttt-ttcatgttgatacaggtttcatattcacttttgatattcttttgtggaa |
108 |
Q |
| |
|
|||||||||||||||||| || ||||||||||| |||| || |||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14306012 |
attattcttgtgctagttcaaaattgaacaaatgtctt-gacttttttttcttcttgttgatacaggtttcatattcacttttgatattcttttgtggaa |
14306110 |
T |
|
| Q |
109 |
tgtttatcacagtagatggattcaacaaaactggaattccaagtgctttatgggagttgatggagccttattcgcgagttgatcgttctagtggaatagc |
208 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
14306111 |
tgtttatcacagtaaatggattcaacaaaactggaattccaagtgctttatgggagatgatggagccttattcacgagttgatcgttctagtggaatagc |
14306210 |
T |
|
| Q |
209 |
gatacttgctcttgttatacttgtcctatcaaatttggcttcaaatgtaccaaccggtaagtgaatgattatcaggt |
285 |
Q |
| |
|
||||||| |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |
|
|
| T |
14306211 |
gatactttctctcgttatacttgtcctatcaaatttggcttcaaatgtaccaactggtaagtgaatgattattaggt |
14306287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University