View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18599_low_50 (Length: 227)
Name: NF18599_low_50
Description: NF18599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18599_low_50 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 20 - 227
Target Start/End: Complemental strand, 45158380 - 45158173
Alignment:
| Q |
20 |
tcaaattcgttcgccaatccactcttcatcttcgtcccactcccttccaatatcttcgtaaggtactaatcctcactcatcttcatctacatttcactct |
119 |
Q |
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| T |
45158380 |
tcaaattcgttcgccaatccactcttcatcttcgtcccactcccttccaatatcttcgtaaggtaccaatcctcactcatcttcatctacatttcactct |
45158281 |
T |
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| Q |
120 |
ctctcgcttcttccctaattccattattcatttcattaaggctgtgcagaaatctatcgttgcggtcaatgcatccgaaacttccacagacgaaaatagt |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45158280 |
ctctcgcttcttccctaattccattattcatttcattaaggctgtgcagaaatctatcgttgcggtcaatgcatccgaaacttccacagacgaaaatagt |
45158181 |
T |
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| Q |
220 |
ggcggtgg |
227 |
Q |
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|||||||| |
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| T |
45158180 |
ggcggtgg |
45158173 |
T |
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