View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18599_low_52 (Length: 225)
Name: NF18599_low_52
Description: NF18599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18599_low_52 |
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Alignment Details
Target: chr6 (Bit Score: 138; Significance: 3e-72; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 30935325 - 30935115
Alignment:
| Q |
1 |
tgaagctcacattcttgaaaagaagagctctgccactatatattatggtaagaagtctttcacctgaaaaaatgaatgaatgaacagacgagataatctc |
100 |
Q |
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| T |
30935325 |
tgaagctcacattcttgaaaagaaaggctctgccactatatattatggtaagcggtcttttacctgaaaaaa--aatgaatgaatagacaagatagtctc |
30935228 |
T |
|
| Q |
101 |
tgaatttgtaactatcgttctatttagtctttgaattttttgaaagatcacaatagacgttgggtttattttgcgttattcagtttcatctatccgttaa |
200 |
Q |
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||||||||||| |||||||| ||||||||||||||||||| | ||||||||| ||||| ||||||||||||||||||||| |||||||||||||||||| |
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| T |
30935227 |
tgaatttgtaaatatcgttcaatttagtctttgaatttttcgtaagatcacagtagactttgggtttattttgcgttatttggtttcatctatccgttaa |
30935128 |
T |
|
| Q |
201 |
cttcaaacgttat |
213 |
Q |
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||||||||||||| |
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| T |
30935127 |
cttcaaacgttat |
30935115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 3 - 141
Target Start/End: Complemental strand, 30965485 - 30965348
Alignment:
| Q |
3 |
aagctcacattcttgaaaagaagagctctgccactatatattatggtaagaagtctttcacctgaaaaaatgaatgaatgaacagacgagataatctctg |
102 |
Q |
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||||||||||||||||||||| |||| |||||| |||||||||||||||||||||| || |||||||| ||| |||| ||| | || |||||| |
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| T |
30965485 |
aagctcacattcttgaaaagagaggctcggccactgtatattatggtaagaagtcttttacatgaaaaaa-atttgagtgaatagaaaatttagtctctg |
30965387 |
T |
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| Q |
103 |
aatttgtaactatcgttctatttagtctttgaatttttt |
141 |
Q |
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| T |
30965386 |
aatttgtaactattggtcaatttagtttctgaatttttt |
30965348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 30994234 - 30994106
Alignment:
| Q |
1 |
tgaagctcacattcttgaaaagaagagctctgccactatatattatggtaagaagtctttcacctga-aaaaatgaatgaatgaacagacgagataatct |
99 |
Q |
| |
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|||||||||||||||||| ||||| |||| ||||| |||||||||||||||||| ||| |||||| ||||| ||| |||| ||| | || ||| |
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| T |
30994234 |
tgaagctcacattcttgataagaaaggctcgcccactgtatattatggtaagaagtgttttacctgataaaaaactttgagtgaatagaaaatttagtct |
30994135 |
T |
|
| Q |
100 |
ctgaatttgtaactatcgttctatttagt |
128 |
Q |
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|||| |||||||||||||||| ||||||| |
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| T |
30994134 |
ctgagtttgtaactatcgttcaatttagt |
30994106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 215
Target Start/End: Complemental strand, 30994081 - 30994048
Alignment:
| Q |
182 |
agtttcatctatccgttaacttcaaacgttatct |
215 |
Q |
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|||||||||| ||||||||||||||||||||||| |
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| T |
30994081 |
agtttcatctctccgttaacttcaaacgttatct |
30994048 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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