View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18599_low_6 (Length: 574)
Name: NF18599_low_6
Description: NF18599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18599_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 388; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 92 - 559
Target Start/End: Original strand, 46071942 - 46072392
Alignment:
| Q |
92 |
ctatggaacaccacctcattgagtatcacgattatatttgatgctcttagagtatcacagttatgcaaatagtccggctaaaatcatgagaatttgattg |
191 |
Q |
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| T |
46071942 |
ctatggaacaccacctcattgagtatcacgattatatttgatgctcttagacgatcacagttatgcaaatagtccggctaaaatcatgagaatttgattg |
46072041 |
T |
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| Q |
192 |
agataatgcgtgtccttttcaatttaaccaacgattgtaagctaaaatttgacctatagaaaagcaccaacattagtatccacacgcacagtggataccc |
291 |
Q |
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| T |
46072042 |
agataatgcgtgtccttttcaatttaaccaacgattgtaagctaaaatttgacctatagaaaagcaccaacattagtacccacacgcatagtggataccc |
46072141 |
T |
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| Q |
292 |
cgagagatttgaagaactattcatagcagtgtataaacttaattaaattatatgcaaatattgaatgatattccttttgataaagaaaactggcagaaca |
391 |
Q |
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| T |
46072142 |
cgagagatttgaagaactattcatagcagtgtgtaaaattaattaaattatatgcaaatattgaatgatattccttttgataaagaaaactggcagaaca |
46072241 |
T |
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| Q |
392 |
catctacaaaataaaggaatctatacaaatttttcatctttatttacaatgaaaaatatggcagcttaacagaaaatatatctcccacttcagtatagag |
491 |
Q |
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| T |
46072242 |
catctacaaaataaaggaatctatacaaatttttcatctttatttacaatgaaaaatatggcagcttaacagaaaa-----------------tatagag |
46072324 |
T |
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| Q |
492 |
gctgagagttgatataccccagctgattcgaacacggtttaaaatacctaaagttgcatcttcttcat |
559 |
Q |
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| T |
46072325 |
gctgagagttgatataccccagctgattcgaacacggtttaaaatacctaaagttgcatcttcttcat |
46072392 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 20 - 96
Target Start/End: Original strand, 46069876 - 46069952
Alignment:
| Q |
20 |
acttctaaattctgacagcagccatacatattcataaatctcgcagcaatagccctacagtcatccagtctcctatg |
96 |
Q |
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| T |
46069876 |
acttctaaattctgacagcagccatacatattcataaatctcgcagcaatagccctacagtcatccagtctcctatg |
46069952 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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