View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18599_low_9 (Length: 495)
Name: NF18599_low_9
Description: NF18599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18599_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 445; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 19 - 483
Target Start/End: Complemental strand, 45144376 - 45143912
Alignment:
| Q |
19 |
ataactcgctagtctaacaatttaggtttttataatgtaagtgtagatactaaaccattcgctttcctcacctagtcaaaactgagtgtggtttttactc |
118 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45144376 |
ataactcgctagtctaacaatttaggtttttaaaatgtaagtgtagatactaaaccattcgctttcctcacctagtcaaaactgagtgtggtttttactc |
45144277 |
T |
|
| Q |
119 |
attgaaggtgttgtggtcgtttaggttaacttccattttttattcgttgtttacattgttcaaaattcatggtggaaagccgacatctcaatgccctttg |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45144276 |
attgaaggtgttgtggtcgtttaggttaacttccattttttattcgttgtttacattgttcaaaattcatggtggaaagccgacatctcaatgccctttg |
45144177 |
T |
|
| Q |
219 |
ttatagaaatttttacggcaaattcatagatgtaatcacgtgttctatcagaattttggttcttgtagtgaggtcgtttgtatctgttatttggatacaa |
318 |
Q |
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|||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45144176 |
ttatagaaatttttacagcaaatccatagatgtaatcacgtgttctatcagaattttggttcttgtagtgaggtcgtttgtatctgttatttggatacaa |
45144077 |
T |
|
| Q |
319 |
acttaacgctttgatgaaactctcaaaattaataacactaaaacatattttcaatttgtgggataaggttatttttaaattgtagctgcactatattttt |
418 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45144076 |
acttaacgctttgatgaaactctcaaaattaataacactaaaacatatttttaatttgtgggataaggttatttttaaattgtagctgcactatattttt |
45143977 |
T |
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| Q |
419 |
cttaccattgtcgtgtgagaatctataattttctcttacactcatggaactgtttgccacaggtt |
483 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
45143976 |
cttaccattgtcgtgtgagaatctataattttctcttacactcatggaactgtttgccataggtt |
45143912 |
T |
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