View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1859C-Insertion-4 (Length: 914)

Name: NF1859C-Insertion-4
Description: NF1859C
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1859C-Insertion-4
NF1859C-Insertion-4
[»] chr5 (3 HSPs)
chr5 (33-912)||(2746948-2747840)
chr5 (789-870)||(2747856-2747939)
chr5 (8-41)||(2752148-2752181)


Alignment Details
Target: chr5 (Bit Score: 714; Significance: 0; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 714; E-Value: 0
Query Start/End: Original strand, 33 - 912
Target Start/End: Original strand, 2746948 - 2747840
Alignment:
Q  33 ttccatttctagatgctttatactttaatctgatgattttaatttccttcttttcttttgcttttatccagttgcaactatttttattccttgccattgt 132  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2746948 ttccatttctagatgctttatactttaatctgatgattttaatttccttcttttcttttgcttttatccagttgcaactatttttattccttgccattgt 2747047  T
Q  133 tgtgttttatactggtggtccaagtgttattattcagtaatttggtttctcttgacttggttacatgtcggtcatattcttacgtcagaaatggctaaat 232  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2747048 tgtgttttatattggtggtccaagtgttattattcagtaatttggtttctcttgacttggttacatgtcggtcatattcttacgtcagaaatggctaaat 2747147  T
Q  233 tgatggtaattggaattcacaaatctcccagacatgtataatactggtttaaccgaggcacttatacatagataactatctttcatggtttctgatgttt 332  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  2747148 tgatggtaattggaattcacaaatctcccagacatgtataagactggtttaaccgaggcagttatacatagataactatctttcatggtttctgatgttt 2747247  T
Q  333 atcttctgtacagattgcaatgtgcaagtaatacttaatttctaacgtttttgtttatcccttctaaggtgaatggatgaacagctccgctggacaggct 432  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2747248 atcttctgtacagattgcaatgtgcaagtgatacttaatttctaacgtttttgtttatcccttctaaggtgaatggatgaacagctccgctggacaggct 2747347  T
Q  433 ttttcacctcatgttattaccattggacctcaagaggtaattgtattcttccatttcgtcatacgtataggtttcaatccactttgtttatatttagctg 532  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  2747348 ttttcacctcatgttatcaccattggacctcaagaggtaattgtattcttccatttcgtcatacgtataggtttcaatccactttgtttatatttagttg 2747447  T
Q  533 ttttnnnnnnnnnnnnnntctgaatgcaatgatgttgaggctgcatgtattgaaacagaagattttggtttgtttccaactttctatatcatatttttaa 632  Q
    ||||              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2747448 ttttaaaaaaaaaaaaaatctgaatgcaatgatgttgaggctgcatgtattgaaacagaagattttggtttgtttccaactttctatatcatatttttaa 2747547  T
Q  633 atcataataccccattggtctaatgataccaacatcattgttgacattgacgtaaggaaacagctaaatattttcacaacc-aagttgctacattatgac 731  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  2747548 atcataataccccattggtctaatgataccaacatcattgttgacattgacgtaaggaaacagctaaatattttcacaaccaaagttgctacattatgac 2747647  T
Q  732 ttgaaagaagttgagtacttcttatttaac-aaaaagcctaaga--tgtgc-atagagagattttt--gggggaaaaaacatgcgcaagcctcatggata 825  Q
    |||||||||||||||||||||||||||||| |||||||||||||    ||| ||||||||||||||  |||| |||||||||||||||||||||||| ||    
T  2747648 ttgaaagaagttgagtacttcttatttaacaaaaaagcctaagaatattgcaatagagagattttttgggggaaaaaaacatgcgcaagcctcatgggta 2747747  T
Q  826 gtttga-gagatgtaattacgttcataatgtttaattagatga-tttactta--ccataatgacgtgga-gggttatgtaagt-gaaattgcg 912  Q
    ||||||  ||||||||||||||||||||||||||||||||||| ||||||||  | ||||||||||||| ||||||||||||| |||||||||    
T  2747748 gtttgataagatgtaattacgttcataatgtttaattagatgattttacttaaccaataatgacgtggaggggttatgtaagtggaaattgcg 2747840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 789 - 870
Target Start/End: Original strand, 2747856 - 2747939
Alignment:
Q  789 tttttgggggaaaa-aacatgcgcaagcctcatggatagtttga-gagatgtaattacgttcataatgtttaattagatgattt 870  Q
    |||||||||||||| |||||||||||||||||||||||||||||  ||||||||||||||||| || |||| ||||||||||||    
T  2747856 tttttgggggaaaaaaacatgcgcaagcctcatggatagtttgataagatgtaattacgttcagaacgtttgattagatgattt 2747939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 41
Target Start/End: Complemental strand, 2752181 - 2752148
Alignment:
Q  8 atttttatgtcaaggttggttactcttccatttc 41  Q
    ||||||||||||||||||||||||||| ||||||    
T  2752181 atttttatgtcaaggttggttactctttcatttc 2752148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University