View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1859R-Insertion-1 (Length: 1145)
Name: NF1859R-Insertion-1
Description: NF1859R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1859R-Insertion-1 |
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Alignment Details
Target: chr8 (Bit Score: 367; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 9 - 414
Target Start/End: Complemental strand, 8167441 - 8167033
Alignment:
| Q |
9 |
gaaaacccagtcatcgacactgacaaaaggaagcaagat---gagggcgtagttgaaaccttaaggtttcaacatgaggcaattgaagaacggctggaag |
105 |
Q |
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|||||||||||||||||| |||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
8167441 |
gaaaacccagtcatcgacgctgacaaaaggaagcaggatcatgagggcgtagttgaaaccttaaggtttcaacatgaggcaattgaagaacggctgaaag |
8167342 |
T |
|
| Q |
106 |
aagagaataattatttagaaggaataaaagagagaaacaagagtagttcatgtttttcttgctggtggggtcattctattgatgatatggctttggaatc |
205 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8167341 |
aagagaataattatttagaaggtgtaaaagagagaaacaagagtagttcatgtttttcttgctggtggggtcattctattgatgatatggctttggaatc |
8167242 |
T |
|
| Q |
206 |
tcttgagcaatttaagacttctttggtaaaattgaagcttaatttagatgcatccttgcaaggcaaaaatattcatataactactcaatcttgaatgatt |
305 |
Q |
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| T |
8167241 |
tcttgagcaatttaagacttctttggtaaaattgaagcttaatttagatgcatccttgcaaggcaaaaatattcatataactactcaatcttgaatgatt |
8167142 |
T |
|
| Q |
306 |
gttatgatgaacgacaataacactacaaataggtcggtggatatcaatttcttcaaggttttaatttttcgtatgcttttctttttaagggttcttgatt |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| |
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| T |
8167141 |
gttatgatgaacgacaataacactacaaataggtcggtggatatcaatttcttcaaggttttaatttttcatatgcttttctttttgagggttcttgatt |
8167042 |
T |
|
| Q |
406 |
taggacact |
414 |
Q |
| |
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||||||||| |
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| T |
8167041 |
taggacact |
8167033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 466 - 763
Target Start/End: Complemental strand, 8166981 - 8166683
Alignment:
| Q |
466 |
gtatatcgttcttgattaatagcatctttctagttgttatttaccacttctcgtgcttctataattgttcaacaataaaagaagtcgtcttccagtaatg |
565 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8166981 |
gtatatcgttcttgattaatggcatctttctagttgttatttaccactcctcgtgcttctataattgttcaacaataaaagaagtcgtcttccagtaatg |
8166882 |
T |
|
| Q |
566 |
tttagagtttagactttattgttttcacttttcatcatatgtctcttcaaagttaattacactgcgttatttaacgtatgttaatggcagaatatttcct |
665 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8166881 |
tttagagtttagactttattgttttcacttttcatcatatgtctcttcaaggttaattacactgcgttatttaacgtatgttaatggcagaatatttcct |
8166782 |
T |
|
| Q |
666 |
actgaattaaaataagatctgtttagtaaatgcttttttcaaaaaatttcttcttgggaattatg-agatcatgagatcaaggaataaaaaagaaagaa |
763 |
Q |
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||||||||||| ||||||||||||||| ||||||||||||||| |||||||| ||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
8166781 |
actgaattaaactaagatctgtttagttaatgcttttttcaaattccttcttcttaggaattatgaagatcatgagatcaaggaataaaaaagaaagaa |
8166683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 136; Significance: 2e-70; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 136; E-Value: 2e-70
Query Start/End: Original strand, 9 - 268
Target Start/End: Complemental strand, 50707508 - 50707249
Alignment:
| Q |
9 |
gaaaacccagtcatcgacactgacaaaaggaagcaagatgagggcgtagttgaaaccttaaggtttcaacatgaggcaattgaagaacggctggaagaag |
108 |
Q |
| |
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||||||||||||||| ||||||| ||| |||||||||||||| | | ||||||||| |||| ||||||||||| ||||| ||||||||||| |||||| |
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| T |
50707508 |
gaaaacccagtcatcaacactgaaaaagggaagcaagatgagtacacaattgaaacctcaaggcttcaacatgagacaattcaagaacggctgaaagaag |
50707409 |
T |
|
| Q |
109 |
agaataattatttagaaggaataaaagagagaaacaagagtagttcatgtttttcttgctggtggggtcattctattgatgatatggctttggaatctct |
208 |
Q |
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|||| ||| ||||| ||| ||||||||| |||||| ||||||||||| || ||| ||||||| ||||||||||||||||||||||||||||||||| |
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| T |
50707408 |
agaagaataatttacaagctgtaaaagagacaaacaacagtagttcatgccttccttcttggtgggatcattctattgatgatatggctttggaatctct |
50707309 |
T |
|
| Q |
209 |
tgagcaatttaagacttctttggtaaaattgaagcttaatttagatgcatccttgcaagg |
268 |
Q |
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| |||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| |
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| T |
50707308 |
taagcaatttaagacttctttgaaaaaattgaagcttaatttagatgcatctttgcaagg |
50707249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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