View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1859R-Insertion-2 (Length: 963)

Name: NF1859R-Insertion-2
Description: NF1859R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1859R-Insertion-2
NF1859R-Insertion-2
[»] scaffold0013 (1 HSPs)
scaffold0013 (9-772)||(38267-39035)
[»] chr1 (25 HSPs)
chr1 (496-650)||(45656500-45656654)
chr1 (80-268)||(45656078-45656266)
chr1 (714-754)||(29739329-29739369)
chr1 (719-754)||(34733397-34733432)
chr1 (715-754)||(38448895-38448934)
chr1 (716-755)||(40693680-40693719)
chr1 (716-754)||(13054867-13054905)
chr1 (716-754)||(17139546-17139584)
chr1 (716-754)||(21400052-21400090)
chr1 (716-754)||(24752677-24752715)
chr1 (714-768)||(26755608-26755661)
chr1 (716-754)||(31890778-31890816)
chr1 (716-754)||(32944730-32944768)
chr1 (716-754)||(42045401-42045439)
chr1 (716-754)||(47528476-47528514)
chr1 (716-754)||(48730668-48730706)
chr1 (716-754)||(52267758-52267796)
chr1 (717-754)||(2613717-2613754)
chr1 (716-795)||(6423751-6423829)
chr1 (716-768)||(17280101-17280151)
chr1 (721-754)||(17283950-17283983)
chr1 (721-754)||(23228524-23228557)
chr1 (721-754)||(36690966-36690999)
chr1 (721-754)||(36707067-36707100)
chr1 (721-754)||(43021657-43021690)
[»] chr5 (17 HSPs)
chr5 (716-795)||(4009860-4009938)
chr5 (715-754)||(36321523-36321562)
chr5 (716-754)||(3445276-3445314)
chr5 (716-754)||(24485693-24485731)
chr5 (708-754)||(37462098-37462143)
chr5 (714-754)||(15889403-15889443)
chr5 (714-754)||(16133094-16133134)
chr5 (716-768)||(36822330-36822382)
chr5 (716-754)||(5485180-5485218)
chr5 (716-754)||(6489001-6489039)
chr5 (716-754)||(10199013-10199051)
chr5 (716-754)||(13220649-13220687)
chr5 (716-754)||(27174821-27174859)
chr5 (716-754)||(28207126-28207164)
chr5 (716-754)||(33133633-33133671)
chr5 (716-754)||(34436845-34436883)
chr5 (716-754)||(37932324-37932362)
[»] chr4 (28 HSPs)
chr4 (308-645)||(40947875-40948209)
chr4 (716-768)||(19731145-19731197)
chr4 (716-754)||(7230274-7230312)
chr4 (708-754)||(10261798-10261843)
chr4 (716-754)||(10303540-10303578)
chr4 (716-754)||(13121538-13121576)
chr4 (708-754)||(21562612-21562657)
chr4 (708-754)||(24079869-24079914)
chr4 (708-754)||(26926739-26926784)
chr4 (708-754)||(43330133-43330178)
chr4 (708-754)||(51450199-51450244)
chr4 (709-752)||(48955279-48955322)
chr4 (716-754)||(2186362-2186400)
chr4 (716-754)||(9946421-9946459)
chr4 (716-754)||(10118291-10118329)
chr4 (716-754)||(12322667-12322705)
chr4 (716-754)||(14577536-14577574)
chr4 (708-754)||(19588140-19588186)
chr4 (716-754)||(20799423-20799461)
chr4 (716-754)||(21991276-21991314)
chr4 (716-754)||(36203230-36203268)
chr4 (716-754)||(49473639-49473677)
chr4 (716-754)||(50362168-50362206)
chr4 (716-754)||(52270059-52270097)
chr4 (716-754)||(55061031-55061069)
chr4 (716-753)||(14137044-14137081)
chr4 (709-754)||(16996449-16996494)
chr4 (717-754)||(31780740-31780777)
[»] chr8 (22 HSPs)
chr8 (716-795)||(27587215-27587292)
chr8 (708-754)||(20665392-20665437)
chr8 (708-754)||(30550755-30550800)
chr8 (708-754)||(44215504-44215549)
chr8 (717-754)||(17704008-17704045)
chr8 (709-754)||(23816777-23816822)
chr8 (717-754)||(24033251-24033288)
chr8 (716-768)||(10752402-10752454)
chr8 (714-754)||(19163565-19163605)
chr8 (716-755)||(38204436-38204475)
chr8 (716-754)||(6314352-6314390)
chr8 (716-754)||(11708980-11709018)
chr8 (716-754)||(19778059-19778097)
chr8 (716-754)||(22775622-22775660)
chr8 (716-754)||(27750933-27750971)
chr8 (713-755)||(30176576-30176618)
chr8 (716-754)||(32555248-32555286)
chr8 (716-754)||(39821878-39821916)
chr8 (716-749)||(8839824-8839857)
chr8 (717-754)||(9656026-9656063)
chr8 (721-754)||(13477899-13477932)
chr8 (717-754)||(31466274-31466311)
[»] chr2 (25 HSPs)
chr2 (715-768)||(35456836-35456889)
chr2 (708-754)||(3708680-3708725)
chr2 (708-754)||(11868691-11868736)
chr2 (716-754)||(28277705-28277743)
chr2 (708-754)||(35360084-35360129)
chr2 (716-754)||(41187486-41187524)
chr2 (719-768)||(40032883-40032932)
chr2 (716-768)||(35820317-35820368)
chr2 (715-754)||(41204530-41204569)
chr2 (716-754)||(7052767-7052805)
chr2 (716-754)||(9383238-9383276)
chr2 (716-754)||(9842231-9842269)
chr2 (716-754)||(14735922-14735960)
chr2 (716-754)||(18231502-18231540)
chr2 (716-754)||(19179079-19179117)
chr2 (716-754)||(25625131-25625169)
chr2 (716-750)||(27934890-27934924)
chr2 (716-754)||(44526122-44526160)
chr2 (721-754)||(7413218-7413251)
chr2 (717-754)||(9752126-9752163)
chr2 (717-754)||(10332304-10332341)
chr2 (719-768)||(13394998-13395046)
chr2 (721-754)||(24593375-24593408)
chr2 (716-753)||(41542830-41542867)
chr2 (717-754)||(41939137-41939174)
[»] chr3 (24 HSPs)
chr3 (707-754)||(7868707-7868754)
chr3 (717-768)||(12043112-12043163)
chr3 (708-754)||(916426-916471)
chr3 (716-754)||(1149098-1149136)
chr3 (716-754)||(16980383-16980421)
chr3 (721-754)||(21245792-21245825)
chr3 (716-755)||(53706818-53706857)
chr3 (716-754)||(8127457-8127495)
chr3 (716-754)||(10498724-10498762)
chr3 (716-754)||(10926463-10926501)
chr3 (716-754)||(18870754-18870792)
chr3 (716-754)||(21506787-21506825)
chr3 (716-754)||(35191846-35191884)
chr3 (716-754)||(39481135-39481173)
chr3 (715-753)||(44447191-44447229)
chr3 (716-754)||(44579630-44579668)
chr3 (716-754)||(48315053-48315091)
chr3 (716-754)||(52904172-52904210)
chr3 (721-754)||(8113591-8113624)
chr3 (717-754)||(8139710-8139747)
chr3 (717-754)||(25340953-25340990)
chr3 (714-751)||(33771682-33771719)
chr3 (721-754)||(41258970-41259003)
chr3 (721-754)||(46469276-46469309)
[»] chr7 (23 HSPs)
chr7 (708-754)||(19036131-19036176)
chr7 (708-754)||(20718460-20718505)
chr7 (708-754)||(20763141-20763186)
chr7 (708-754)||(29488707-29488752)
chr7 (708-754)||(33232426-33232471)
chr7 (708-754)||(34284568-34284613)
chr7 (717-754)||(41527555-41527592)
chr7 (716-795)||(10244721-10244797)
chr7 (716-754)||(3584198-3584236)
chr7 (716-750)||(5352323-5352357)
chr7 (716-754)||(5526719-5526757)
chr7 (720-754)||(13044171-13044205)
chr7 (716-754)||(19416508-19416546)
chr7 (716-754)||(20243249-20243287)
chr7 (720-754)||(23863729-23863763)
chr7 (716-754)||(30857242-30857280)
chr7 (716-754)||(31038551-31038589)
chr7 (716-754)||(37930038-37930076)
chr7 (716-754)||(38728202-38728240)
chr7 (716-754)||(39801700-39801738)
chr7 (716-754)||(48980481-48980519)
chr7 (721-754)||(1398426-1398459)
chr7 (716-749)||(38088051-38088084)
[»] chr6 (18 HSPs)
chr6 (708-754)||(247646-247691)
chr6 (708-754)||(33976231-33976276)
chr6 (716-768)||(9333725-9333776)
chr6 (715-754)||(7083021-7083060)
chr6 (716-751)||(15291722-15291757)
chr6 (720-754)||(404161-404195)
chr6 (716-754)||(788860-788898)
chr6 (720-766)||(3863351-3863397)
chr6 (716-754)||(4494900-4494938)
chr6 (708-754)||(12582258-12582303)
chr6 (720-754)||(16130763-16130797)
chr6 (716-754)||(16890477-16890515)
chr6 (722-768)||(18254117-18254162)
chr6 (716-754)||(18256877-18256915)
chr6 (716-754)||(28898850-28898888)
chr6 (716-754)||(32053782-32053820)
chr6 (717-766)||(10772313-10772362)
chr6 (717-754)||(20744133-20744170)
[»] scaffold0098 (1 HSPs)
scaffold0098 (716-754)||(5419-5457)
[»] scaffold0011 (1 HSPs)
scaffold0011 (716-754)||(185257-185295)
[»] scaffold0005 (1 HSPs)
scaffold0005 (716-754)||(239801-239839)


Alignment Details
Target: scaffold0013 (Bit Score: 665; Significance: 0; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 665; E-Value: 0
Query Start/End: Original strand, 9 - 772
Target Start/End: Complemental strand, 39035 - 38267
Alignment:
Q  9 ttttggaactactaattagagtatcatagtattaaattagatgatgaatgattgtattgaatatgttgtcacaggtgtccacttctaagacgattagtct 108  Q
    |||||| ||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39035 ttttgggactactaattagagtattatagtattaaattcgatgatgaatgattgtattgaatatgttgtcacaggtgtccacttctaagacgattagtct 38936  T
Q  109 tcgtatcttggaacagaatcaacaaagtggtaatgcgaaaggctattatgggatggaaagatctagagtcaatgacaatgcctaccatagaatatccaaa 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38935 tcgtatcttggaacagaatcaacaaagtggtaatgcgaaaggctattaaaggatggaaagatctagagtcaatgacaatgcctaccatagaatatccaaa 38836  T
Q  209 ttatatttttcaagaaatttcaaggagttgcaagaaattcagagaactcaaggttatgggacgtttaaatttgcaatttgcttcatctctcacaataaat 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38835 ttatatttttcaagaaatttcaaggagttgcaagaaattcagagaactcaaggttatgggacgtttaaatttgcaatttgcttcatctctcacaataaat 38736  T
Q  309 cttccaaacttaagagtattaagtattcgatgttcagggttggtgaaagaagctctcatcttaattttagatagattacaatatttagaagtgctaaata 408  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38735 cttccaaacttaagagtattgagtattcgatgttcagggttggtgaaagaagctctcatcttaattttagatagattacaatatttagaagtgctaaata 38636  T
Q  409 tttcacattcttgttttgtggagcctttttcagatagtgaggaaggatataggtttatcagtgatgttgacactgacattattagcaagaaggcttctaa 508  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38635 tttcacattcttgttttgtggagccttttccagatagtgaggaaggatataggtttatcagtgatgttgacactgacattattagcaagaaggcttctaa 38536  T
Q  509 gttgcgtgaatttcacacatgcatgaaagaatcatgcatcatgtgtcatcgaacaagagttgattgtgggcttcctaggtggtttgggtatgaggaaggg 608  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  38535 gttgcgtgaatttcacacatgcatgaaagaatcatgcatcatgtgtcatcgaacaagagttgattgtgggcttcctaggtggtttaggtatgaggaaggg 38436  T
Q  609 atttggaaacatgatgaagttagctctcttgcactttgagaagataa-----tatttgatttgttaattatttgtgatattttactcttgtaggcaatta 703  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||     ||||||||||||||||||||||||||||||||||||||| ||||||||    
T  38435 atttggaaacatgatgaagttagctctcttgcactctgagaagataatactgtatttgatttgttaattatttgtgatattttactcttgtcggcaatta 38336  T
Q  704 gtagttttattcgtcctcgtgagcttagcttagttggtaaggacaatgcattgatacatgcaagggtcc 772  Q
    |||||||| ||  | |||||||| ||  || ||||||||||||||||||||| ||| ||| ||||||||    
T  38335 gtagttttctttttgctcgtgagtttgactcagttggtaaggacaatgcattaatatatgtaagggtcc 38267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 79; Significance: 2e-36; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 496 - 650
Target Start/End: Original strand, 45656500 - 45656654
Alignment:
Q  496 agaaggcttctaagttgcgtgaatttcacacatgcatgaaagaatcatgcatcatgtgtcatcgaacaagagttgattgtgggcttcctaggtggtttgg 595  Q
    |||| ||||||| ||| ||||| |||||||||||||| || ||||| |||||||||||| |  | ||||||| ||||  |||||||  |||||||||       
T  45656500 agaaagcttctaggttacgtgagtttcacacatgcatcaaggaatcgtgcatcatgtgtaagaggacaagagatgatgatgggcttgttaggtggttcaa 45656599  T
Q  596 gtatgaggaagggatttggaaacatgatgaagttagctctcttgcactttgagaa 650  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45656600 gtatgaggaagggatttggaaacatgatgaagttagctctcttgcactttgagaa 45656654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 80 - 268
Target Start/End: Original strand, 45656078 - 45656266
Alignment:
Q  80 caggtgtccacttctaagacgattagtcttcgtatcttggaacagaatcaacaaagtggtaatgcgaaaggctattatgggatggaaagatctagagtca 179  Q
    ||||||||||||| |||||||| ||||||| ||||| |||||| |||| || | | ||| ||| |||||||| ||||  || ||||||||||| |||||     
T  45656078 caggtgtccacttgtaagacgactagtctttgtatcgtggaaccgaataaaaagaatgggaattcgaaaggcaattagaggctggaaagatcttgagtct 45656177  T
Q  180 atgacaatgcctaccatagaatatccaaattatatttttcaagaaatttcaaggagttgcaagaaattcagagaactcaaggttatggg 268  Q
    |||||||||||   |||| |  ||||    ||| ||||| ||||||| |||| |  ||||||||| || ||||||||||||||||||||    
T  45656178 atgacaatgccaggcatatataatccccgatatgtttttgaagaaatctcaaagcattgcaagaactttagagaactcaaggttatggg 45656266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 714 - 754
Target Start/End: Original strand, 29739329 - 29739369
Alignment:
Q  714 tcgtcctcgtgagcttagcttagttggtaaggacaatgcat 754  Q
    |||||||||| ||||||||| ||||||||||||||||||||    
T  29739329 tcgtcctcgttagcttagctcagttggtaaggacaatgcat 29739369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 719 - 754
Target Start/End: Original strand, 34733397 - 34733432
Alignment:
Q  719 ctcgtgagcttagcttagttggtaaggacaatgcat 754  Q
    ||||||||||||||| ||||||||||||||||||||    
T  34733397 ctcgtgagcttagctcagttggtaaggacaatgcat 34733432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 715 - 754
Target Start/End: Complemental strand, 38448934 - 38448895
Alignment:
Q  715 cgtcctcgtgagcttagcttagttggtaaggacaatgcat 754  Q
    ||||| ||||||||||||| ||||||||||||||||||||    
T  38448934 cgtccccgtgagcttagctcagttggtaaggacaatgcat 38448895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 716 - 755
Target Start/End: Original strand, 40693680 - 40693719
Alignment:
Q  716 gtcctcgtgagcttagcttagttggtaaggacaatgcatt 755  Q
    ||||||||||| |||||| |||||||||||||||||||||    
T  40693680 gtcctcgtgagtttagctcagttggtaaggacaatgcatt 40693719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 716 - 754
Target Start/End: Original strand, 13054867 - 13054905
Alignment:
Q  716 gtcctcgtgagcttagcttagttggtaaggacaatgcat 754  Q
    ||||| ||||||||||||||||||||| |||||||||||    
T  13054867 gtccttgtgagcttagcttagttggtagggacaatgcat 13054905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 716 - 754
Target Start/End: Complemental strand, 17139584 - 17139546
Alignment:
Q  716 gtcctcgtgagcttagcttagttggtaaggacaatgcat 754  Q
    |||||||||||||||||| |||||||| |||||||||||    
T  17139584 gtcctcgtgagcttagctcagttggtagggacaatgcat 17139546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 716 - 754
Target Start/End: Complemental strand, 21400090 - 21400052
Alignment:
Q  716 gtcctcgtgagcttagcttagttggtaaggacaatgcat 754  Q
    |||||||||||||||||| |||||||| |||||||||||    
T  21400090 gtcctcgtgagcttagctcagttggtagggacaatgcat 21400052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 716 - 754
Target Start/End: Complemental strand, 24752715 - 24752677
Alignment:
Q  716 gtcctcgtgagcttagcttagttggtaaggacaatgcat 754  Q
    |||||||||||||||||| |||||||| |||||||||||    
T  24752715 gtcctcgtgagcttagctcagttggtatggacaatgcat 24752677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 714 - 768
Target Start/End: Original strand, 26755608 - 26755661
Alignment:
Q  714 tcgtcctcgtgagcttagcttagttggtaaggacaatgcattgatacatgcaagg 768  Q
    |||||||||||||||||||| ||||| || |||||||||||| ||| ||||||||    
T  26755608 tcgtcctcgtgagcttagctcagttgatatggacaatgcatt-atatatgcaagg 26755661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 716 - 754
Target Start/End: Complemental strand, 31890816 - 31890778
Alignment:
Q  716 gtcctcgtgagcttagcttagttggtaaggacaatgcat 754  Q
    ||||||||||| |||||| ||||||||||||||||||||    
T  31890816 gtcctcgtgagtttagctcagttggtaaggacaatgcat 31890778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 716 - 754
Target Start/End: Original strand, 32944730 - 32944768
Alignment:
Q  716 gtcctcgtgagcttagcttagttggtaaggacaatgcat 754  Q
    ||||| ||||||||||||||||||||| |||||||||||    
T  32944730 gtccttgtgagcttagcttagttggtatggacaatgcat 32944768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 716 - 754
Target Start/End: Complemental strand, 42045439 - 42045401
Alignment:
Q  716 gtcctcgtgagcttagcttagttggtaaggacaatgcat 754  Q
    |||||||||||||||||| |||||||| |||||||||||    
T  42045439 gtcctcgtgagcttagctcagttggtatggacaatgcat 42045401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 716 - 754
Target Start/End: Complemental strand, 47528514 - 47528476
Alignment:
Q  716 gtcctcgtgagcttagcttagttggtaaggacaatgcat 754  Q
    |||| ||||||||||||| ||||||||||||||||||||    
T  47528514 gtccccgtgagcttagctcagttggtaaggacaatgcat 47528476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 716 - 754
Target Start/End: Complemental strand, 48730706 - 48730668
Alignment:
Q  716 gtcctcgtgagcttagcttagttggtaaggacaatgcat 754  Q
    ||||||||||||| |||| ||||||||||||||||||||    
T  48730706 gtcctcgtgagctcagctcagttggtaaggacaatgcat 48730668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 716 - 754
Target Start/End: Original strand, 52267758 - 52267796
Alignment:
Q  716 gtcctcgtgagcttagcttagttggtaaggacaatgcat 754  Q
    ||||||||||||||| || ||||||||||||||||||||    
T  52267758 gtcctcgtgagcttaactcagttggtaaggacaatgcat 52267796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 717 - 754
Target Start/End: Original strand, 2613717 - 2613754
Alignment:
Q  717 tcctcgtgagcttagcttagttggtaaggacaatgcat 754  Q
    ||||||||||||||||| |||||||| |||||||||||    
T  2613717 tcctcgtgagcttagctcagttggtatggacaatgcat 2613754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 716 - 795
Target Start/End: Complemental strand, 6423829 - 6423751
Alignment:
Q  716 gtcctcgtgagcttagcttagttggtaaggacaatgcattgatacatgcaagggtcccggagttc-aaccccggccaccac 795  Q
    ||||||||||||||| || |||||||| | |||||||||| ||| ||||||||   |||| |||| |||||||||||||||    
T  6423829 gtcctcgtgagcttaactcagttggtatgaacaatgcatttatatatgcaagg--tccggggttcaaaccccggccaccac 6423751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 716 - 768
Target Start/End: Complemental strand, 17280151 - 17280101
Alignment:
Q  716 gtcctcgtgagcttagcttagttggtaaggacaatgcattgatacatgcaagg 768  Q
    |||||||||||||||||| |||||||| |||||||||  | ||||||||||||    
T  17280151 gtcctcgtgagcttagctcagttggtatggacaatgc--taatacatgcaagg 17280101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 721 - 754
Target Start/End: Original strand, 17283950 - 17283983
Alignment:
Q  721 cgtgagcttagcttagttggtaaggacaatgcat 754  Q
    ||||||||||||| ||||||||||||||||||||    
T  17283950 cgtgagcttagctcagttggtaaggacaatgcat 17283983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 721 - 754
Target Start/End: Complemental strand, 23228557 - 23228524
Alignment:
Q  721 cgtgagcttagcttagttggtaaggacaatgcat 754  Q
    ||||||||||||| ||||||||||||||||||||    
T  23228557 cgtgagcttagctcagttggtaaggacaatgcat 23228524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 721 - 754
Target Start/End: Original strand, 36690966 - 36690999
Alignment:
Q  721 cgtgagcttagcttagttggtaaggacaatgcat 754  Q
    ||||||||||||| ||||||||||||||||||||    
T  36690966 cgtgagcttagctcagttggtaaggacaatgcat 36690999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 721 - 754
Target Start/End: Original strand, 36707067 - 36707100
Alignment:
Q  721 cgtgagcttagcttagttggtaaggacaatgcat 754  Q
    ||||||||||||| ||||||||||||||||||||    
T  36707067 cgtgagcttagctcagttggtaaggacaatgcat 36707100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 721 - 754
Target Start/End: Complemental strand, 43021690 - 43021657
Alignment:
Q  721 cgtgagcttagcttagttggtaaggacaatgcat 754  Q
    |||||||||||||||||||||| |||||||||||    
T  43021690 cgtgagcttagcttagttggtagggacaatgcat 43021657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 1e-16; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 716 - 795
Target Start/End: Original strand, 4009860 - 4009938
Alignment:
Q  716 gtcctcgtgagcttagcttagttggtaaggacaatgcattgatacatgcaagggtcccggagttc-aaccccggccaccac 795  Q
    |||||||||||||||||| ||||||||||||||||||||| ||| |||||||||  |||| |||| |||||||||||||||    
T  4009860 gtcctcgtgagcttagctcagttggtaaggacaatgcattaatatatgcaaggg--ccggggttcaaaccccggccaccac 4009938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 715 - 754
Target Start/End: Complemental strand, 36321562 - 36321523
Alignment:
Q  715 cgtcctcgtgagcttagcttagttggtaaggacaatgcat 754  Q
    ||||||||||||||||||| ||||||||||||||||||||    
T  36321562 cgtcctcgtgagcttagctcagttggtaaggacaatgcat 36321523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 716 - 754
Target Start/End: Complemental strand, 3445314 - 3445276
Alignment:
Q  716 gtcctcgtgagcttagcttagttggtaaggacaatgcat 754  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  3445314 gtcctcgtgagcttagctcagttggtaaggacaatgcat 3445276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 716 - 754
Target Start/End: Original strand, 24485693 - 24485731
Alignment:
Q  716 gtcctcgtgagcttagcttagttggtaaggacaatgcat 754  Q
    ||||||||||||||||||||||||||| |||||||||||    
T  24485693 gtcctcgtgagcttagcttagttggtatggacaatgcat 24485731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 708 - 754
Target Start/End: Original strand, 37462098 - 37462143
Alignment:
Q  708 ttttattcgtcctcgtgagcttagcttagttggtaaggacaatgcat 754  Q
    |||| ||||||||||||||||||||||||||||| ||||||||||||    
T  37462098 ttttcttcgtcctcgtgagcttagcttagttggt-aggacaatgcat 37462143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 714 - 754
Target Start/End: Original strand, 15889403 - 15889443
Alignment:
Q  714 tcgtcctcgtgagcttagcttagttggtaaggacaatgcat 754  Q
    |||||||||||||||||||| |||||||| |||||||||||    
T  15889403 tcgtcctcgtgagcttagctcagttggtagggacaatgcat 15889443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 714 - 754
Target Start/End: Complemental strand, 16133134 - 16133094
Alignment:
Q  714 tcgtcctcgtgagcttagcttagttggtaaggacaatgcat 754  Q
    |||| ||||||||||||||| ||||||||||||||||||||    
T  16133134 tcgttctcgtgagcttagctcagttggtaaggacaatgcat 16133094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 716 - 768
Target Start/End: Complemental strand, 36822382 - 36822330
Alignment:
Q  716 gtcctcgtgagcttagcttagttggtaaggacaatgcattgatacatgcaagg 768  Q
    ||||||||||||||| || | ||||||||||||||||||| ||| ||||||||    
T  36822382 gtcctcgtgagcttaactcaattggtaaggacaatgcattaatatatgcaagg 36822330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 716 - 754
Target Start/End: Original strand, 5485180 - 5485218
Alignment:
Q  716 gtcctcgtgagcttagcttagttggtaaggacaatgcat 754  Q
    |||||||||||||||||| |||||||| |||||||||||    
T  5485180 gtcctcgtgagcttagctcagttggtagggacaatgcat 5485218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 716 - 754
Target Start/End: Original strand, 6489001 - 6489039
Alignment:
Q  716 gtcctcgtgagcttagcttagttggtaaggacaatgcat 754  Q
    |||||||||||||||||| |||||||| |||||||||||    
T  6489001 gtcctcgtgagcttagctcagttggtagggacaatgcat 6489039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 716 - 754
Target Start/End: Original strand, 10199013 - 10199051
Alignment:
Q  716 gtcctcgtgagcttagcttagttggtaaggacaatgcat 754  Q
    |||||||||||||||||| |||||||| |||||||||||    
T  10199013 gtcctcgtgagcttagctcagttggtatggacaatgcat 10199051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 716 - 754
Target Start/End: Complemental strand, 13220687 - 13220649
Alignment:
Q  716 gtcctcgtgagcttagcttagttggtaaggacaatgcat 754  Q
    |||||||||||||||||| ||||||||||||| ||||||    
T  13220687 gtcctcgtgagcttagctcagttggtaaggacgatgcat 13220649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 716 - 754
Target Start/End: Original strand, 27174821 - 27174859
Alignment:
Q  716 gtcctcgtgagcttagcttagttggtaaggacaatgcat 754  Q
    |||||||||||||||||| |||||| |||||||||||||    
T  27174821 gtcctcgtgagcttagctcagttggcaaggacaatgcat 27174859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 716 - 754
Target Start/End: Original strand, 28207126 - 28207164
Alignment:
Q  716 gtcctcgtgagcttagcttagttggtaaggacaatgcat 754  Q
    |||||||||||||||||| |||||||| |||||||||||    
T  28207126 gtcctcgtgagcttagctcagttggtatggacaatgcat 28207164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 716 - 754
Target Start/End: Original strand, 33133633 - 33133671
Alignment:
Q  716 gtcctcgtgagcttagcttagttggtaaggacaatgcat 754  Q
    |||||||||||||||||| |||||||| |||||||||||    
T  33133633 gtcctcgtgagcttagctcagttggtagggacaatgcat 33133671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 716 - 754
Target Start/End: Original strand, 34436845 - 34436883
Alignment:
Q  716 gtcctcgtgagcttagcttagttggtaaggacaatgcat 754  Q
    |||||||||||||||||| |||||||| |||||||||||    
T  34436845 gtcctcgtgagcttagctcagttggtagggacaatgcat 34436883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 716 - 754
Target Start/End: Original strand, 37932324 - 37932362
Alignment:
Q  716 gtcctcgtgagcttagcttagttggtaaggacaatgcat 754  Q
    |||||||||||||||||| |||||||| |||||||||||    
T  37932324 gtcctcgtgagcttagctcagttggtatggacaatgcat 37932362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 308 - 645
Target Start/End: Complemental strand, 40948209 - 40947875
Alignment:
Q  308 tcttccaaacttaagagtattaagtattcgatgttcagggttggtgaaagaagctctcatcttaattttagatagattacaatatttagaagtgctaaat 407  Q
    |||||||||||| | ||| || ||| |||||||||||||||||  ||||||||||||||| ||||| ||||||    || || | ||||||||||| ||     
T  40948209 tcttccaaacttgaaagtgttgagtcttcgatgttcagggttgtcgaaagaagctctcattttaatattagatgagctaaaagacttagaagtgctcaac 40948110  T
Q  408 atttcacattcttgttttgtggagcctttttcagatagtgaggaaggatataggtttatcagtgatgttgacactgacattattagcaagaaggcttcta 507  Q
    |||||||||||||||  |||||  ||| || || ||  | | |||||||||| ||||   |||| | ||||  ||   || |||    |||||| ||| |    
T  40948109 atttcacattcttgtcatgtggtacctcttccatatcctcatgaaggatatatgttttctagtggtattgatcctataatcattg---agaagggttcca 40948013  T
Q  508 agttgcgtgaatttcacacatgcatgaaagaatcatgcatcatgtgtcatcgaacaagagttgattgtgggcttcctaggtggtttgggtatgaggaagg 607  Q
     | ||| ||| ||  ||||||||||| ||||||||||||||||||||||  | |||| ||  |||  ||| |||||||| |||||  | || ||||| ||    
T  40948012 ggctgcttgacttctacacatgcatggaagaatcatgcatcatgtgtcagaggacaaaagcagatgatggacttcctagatggttcagatacgaggatgg 40947913  T
Q  608 gatttggaaacatgatgaagttagctctcttgcacttt 645  Q
    |||||||||| |||||||| | || |||||||||||||    
T  40947912 gatttggaaagatgatgaaataagttctcttgcacttt 40947875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 716 - 768
Target Start/End: Complemental strand, 19731197 - 19731145
Alignment:
Q  716 gtcctcgtgagcttagcttagttggtaaggacaatgcattgatacatgcaagg 768  Q
    |||||||||||||||||| | ||||||||||||||||||| ||| ||||||||    
T  19731197 gtcctcgtgagcttagctcaattggtaaggacaatgcattaatatatgcaagg 19731145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 716 - 754
Target Start/End: Original strand, 7230274 - 7230312
Alignment:
Q  716 gtcctcgtgagcttagcttagttggtaaggacaatgcat 754  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  7230274 gtcctcgtgagcttagctcagttggtaaggacaatgcat 7230312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 708 - 754
Target Start/End: Complemental strand, 10261843 - 10261798
Alignment:
Q  708 ttttattcgtcctcgtgagcttagcttagttggtaaggacaatgcat 754  Q
    |||| ||||||||||||||||||||||||||||| ||||||||||||    
T  10261843 ttttcttcgtcctcgtgagcttagcttagttggt-aggacaatgcat 10261798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 716 - 754
Target Start/End: Complemental strand, 10303578 - 10303540
Alignment:
Q  716 gtcctcgtgagcttagcttagttggtaaggacaatgcat 754  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  10303578 gtcctcgtgagcttagctcagttggtaaggacaatgcat 10303540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 716 - 754
Target Start/End: Original strand, 13121538 - 13121576
Alignment:
Q  716 gtcctcgtgagcttagcttagttggtaaggacaatgcat 754  Q
    ||||||||||||||||||||||||||| |||||||||||    
T  13121538 gtcctcgtgagcttagcttagttggtagggacaatgcat 13121576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 708 - 754
Target Start/End: Original strand, 21562612 - 21562657
Alignment:
Q  708 ttttattcgtcctcgtgagcttagcttagttggtaaggacaatgcat 754  Q
    |||| ||||||||||||||||||||||||||||| ||||||||||||    
T  21562612 ttttcttcgtcctcgtgagcttagcttagttggt-aggacaatgcat 21562657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 708 - 754
Target Start/End: Complemental strand, 24079914 - 24079869
Alignment:
Q  708 ttttattcgtcctcgtgagcttagcttagttggtaaggacaatgcat 754  Q
    |||| ||||||||||||||||||||||||||||| ||||||||||||    
T  24079914 ttttcttcgtcctcgtgagcttagcttagttggt-aggacaatgcat 24079869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 708 - 754
Target Start/End: Complemental strand, 26926784 - 26926739
Alignment:
Q  708 ttttattcgtcctcgtgagcttagcttagttggtaaggacaatgcat 754  Q
    |||| ||||||||||||||||||||||||||||| ||||||||||||    
T  26926784 ttttcttcgtcctcgtgagcttagcttagttggt-aggacaatgcat 26926739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 708 - 754
Target Start/End: Original strand, 43330133 - 43330178
Alignment:
Q  708 ttttattcgtcctcgtgagcttagcttagttggtaaggacaatgcat 754  Q
    |||| ||||||||||||||||||||||||||||| ||||||||||||    
T  43330133 ttttcttcgtcctcgtgagcttagcttagttggt-aggacaatgcat 43330178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 708 - 754
Target Start/End: Original strand, 51450199 - 51450244
Alignment:
Q  708 ttttattcgtcctcgtgagcttagcttagttggtaaggacaatgcat 754  Q
    |||| ||||||||||||||||||||||||||||| ||||||||||||    
T  51450199 ttttcttcgtcctcgtgagcttagcttagttggt-aggacaatgcat 51450244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 709 - 752
Target Start/End: Original strand, 48955279 - 48955322
Alignment:
Q  709 tttattcgtcctcgtgagcttagcttagttggtaaggacaatgc 752  Q
    |||| ||||||||||||||||| || ||||||||||||||||||    
T  48955279 tttactcgtcctcgtgagcttatctcagttggtaaggacaatgc 48955322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 716 - 754
Target Start/End: Complemental strand, 2186400 - 2186362
Alignment:
Q  716 gtcctcgtgagcttagcttagttggtaaggacaatgcat 754  Q
    |||||||||||||||||| |||||||| |||||||||||    
T  2186400 gtcctcgtgagcttagctcagttggtatggacaatgcat 2186362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 716 - 754
Target Start/End: Original strand, 9946421 - 9946459
Alignment:
Q  716 gtcctcgtgagcttagcttagttggtaaggacaatgcat 754  Q
    |||||||||||||||||| |||||||| |||||||||||    
T  9946421 gtcctcgtgagcttagctcagttggtatggacaatgcat 9946459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 716 - 754
Target Start/End: Original strand, 10118291 - 10118329
Alignment:
Q  716 gtcctcgtgagcttagcttagttggtaaggacaatgcat 754  Q
    |||| ||||||||||| ||||||||||||||||||||||    
T  10118291 gtccccgtgagcttagtttagttggtaaggacaatgcat 10118329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 716 - 754
Target Start/End: Original strand, 12322667 - 12322705
Alignment:
Q  716 gtcctcgtgagcttagcttagttggtaaggacaatgcat 754  Q
    |||||||||||||||||| |||||||| |||||||||||    
T  12322667 gtcctcgtgagcttagctcagttggtacggacaatgcat 12322705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 716 - 754
Target Start/End: Complemental strand, 14577574 - 14577536
Alignment:
Q  716 gtcctcgtgagcttagcttagttggtaaggacaatgcat 754  Q
    ||||||||||| |||||| ||||||||||||||||||||    
T  14577574 gtcctcgtgagtttagctcagttggtaaggacaatgcat 14577536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 708 - 754
Target Start/End: Original strand, 19588140 - 19588186
Alignment:
Q  708 ttttattcgtcctcgtgagcttagcttagttggtaaggacaatgcat 754  Q
    |||| ||||||||||||||||||||| | |||||| |||||||||||    
T  19588140 ttttcttcgtcctcgtgagcttagctcaattggtatggacaatgcat 19588186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 716 - 754
Target Start/End: Complemental strand, 20799461 - 20799423
Alignment:
Q  716 gtcctcgtgagcttagcttagttggtaaggacaatgcat 754  Q
    |||||||||||||||||| |||||||| |||||||||||    
T  20799461 gtcctcgtgagcttagctcagttggtagggacaatgcat 20799423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 716 - 754
Target Start/End: Complemental strand, 21991314 - 21991276
Alignment:
Q  716 gtcctcgtgagcttagcttagttggtaaggacaatgcat 754  Q
    ||||||||||||||| ||||||||||| |||||||||||    
T  21991314 gtcctcgtgagcttatcttagttggtatggacaatgcat 21991276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 716 - 754
Target Start/End: Original strand, 36203230 - 36203268
Alignment:
Q  716 gtcctcgtgagcttagcttagttggtaaggacaatgcat 754  Q
    |||||||||||||||||| ||||| ||||||||||||||    
T  36203230 gtcctcgtgagcttagctcagttgataaggacaatgcat 36203268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 716 - 754
Target Start/End: Original strand, 49473639 - 49473677
Alignment:
Q  716 gtcctcgtgagcttagcttagttggtaaggacaatgcat 754  Q
    |||||||||||||||||  ||||||||||||||||||||    
T  49473639 gtcctcgtgagcttagcccagttggtaaggacaatgcat 49473677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 716 - 754
Target Start/End: Complemental strand, 50362206 - 50362168
Alignment:
Q  716 gtcctcgtgagcttagcttagttggtaaggacaatgcat 754  Q
    |||||||||||||||||| |||||||| |||||||||||    
T  50362206 gtcctcgtgagcttagctcagttggtagggacaatgcat 50362168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 716 - 754
Target Start/End: Complemental strand, 52270097 - 52270059
Alignment:
Q  716 gtcctcgtgagcttagcttagttggtaaggacaatgcat 754  Q
    |||||||||||||||||| |||||||| |||||||||||    
T  52270097 gtcctcgtgagcttagctcagttggtatggacaatgcat 52270059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 716 - 754
Target Start/End: Original strand, 55061031 - 55061069
Alignment:
Q  716 gtcctcgtgagcttagcttagttggtaaggacaatgcat 754  Q
    ||||||||| ||||||||||||||||| |||||||||||    
T  55061031 gtcctcgtgtgcttagcttagttggtacggacaatgcat 55061069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 716 - 753
Target Start/End: Original strand, 14137044 - 14137081
Alignment:
Q  716 gtcctcgtgagcttagcttagttggtaaggacaatgca 753  Q
    ||||||||||||||| || |||||||||||||||||||    
T  14137044 gtcctcgtgagcttaactcagttggtaaggacaatgca 14137081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 709 - 754
Target Start/End: Original strand, 16996449 - 16996494
Alignment:
Q  709 tttattcgtcctcgtgagcttagcttagttggtaaggacaatgcat 754  Q
    |||||| |||| ||||||||||||| |||||||||| |||||||||    
T  16996449 tttatttgtccccgtgagcttagctcagttggtaagaacaatgcat 16996494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 717 - 754
Target Start/End: Original strand, 31780740 - 31780777
Alignment:
Q  717 tcctcgtgagcttagcttagttggtaaggacaatgcat 754  Q
    |||| |||||||||||| ||||||||||||||||||||    
T  31780740 tccttgtgagcttagctcagttggtaaggacaatgcat 31780777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000006; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 716 - 795
Target Start/End: Original strand, 27587215 - 27587292
Alignment:
Q  716 gtcctcgtgagcttagcttagttggtaaggacaatgcattgatacatgcaagggtcccggagttc-aaccccggccaccac 795  Q
    |||||||||||||||||| ||||||||||||||||||| ||||| ||||||||   |||| |||| |||||||||||||||    
T  27587215 gtcctcgtgagcttagctcagttggtaaggacaatgca-tgatatatgcaagg--tccggggttcaaaccccggccaccac 27587292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 708 - 754
Target Start/End: Complemental strand, 20665437 - 20665392
Alignment:
Q  708 ttttattcgtcctcgtgagcttagcttagttggtaaggacaatgcat 754  Q
    |||| ||||||||||||||||||||||||||||| ||||||||||||    
T  20665437 ttttcttcgtcctcgtgagcttagcttagttggt-aggacaatgcat 20665392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 708 - 754
Target Start/End: Complemental strand, 30550800 - 30550755
Alignment:
Q  708 ttttattcgtcctcgtgagcttagcttagttggtaaggacaatgcat 754  Q
    |||| ||||||||||||||||||||||||||||| ||||||||||||    
T  30550800 ttttcttcgtcctcgtgagcttagcttagttggt-aggacaatgcat 30550755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 708 - 754
Target Start/End: Complemental strand, 44215549 - 44215504
Alignment:
Q  708 ttttattcgtcctcgtgagcttagcttagttggtaaggacaatgcat 754  Q
    |||| ||||||||||||||||||||||||||||| ||||||||||||    
T  44215549 ttttcttcgtcctcgtgagcttagcttagttggt-aggacaatgcat 44215504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 717 - 754
Target Start/End: Original strand, 17704008 - 17704045
Alignment:
Q  717 tcctcgtgagcttagcttagttggtaaggacaatgcat 754  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  17704008 tcctcgtgagcttagctcagttggtaaggacaatgcat 17704045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 709 - 754
Target Start/End: Original strand, 23816777 - 23816822
Alignment:
Q  709 tttattcgtcctcgtgagcttagcttagttggtaaggacaatgcat 754  Q
    |||||| |||||||||||||||||| |||||||||||| |||||||    
T  23816777 tttatttgtcctcgtgagcttagctcagttggtaaggataatgcat 23816822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 717 - 754
Target Start/End: Original strand, 24033251 - 24033288
Alignment:
Q  717 tcctcgtgagcttagcttagttggtaaggacaatgcat 754  Q
    |||||||||||||| |||||||||||||||||||||||    
T  24033251 tcctcgtgagcttaacttagttggtaaggacaatgcat 24033288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 716 - 768
Target Start/End: Original strand, 10752402 - 10752454
Alignment:
Q  716 gtcctcgtgagcttagcttagttggtaaggacaatgcattgatacatgcaagg 768  Q
    |||||||||||||||||| |||||||||||||||  |||||||| || |||||    
T  10752402 gtcctcgtgagcttagctcagttggtaaggacaaaacattgatatattcaagg 10752454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 714 - 754
Target Start/End: Complemental strand, 19163605 - 19163565
Alignment:
Q  714 tcgtcctcgtgagcttagcttagttggtaaggacaatgcat 754  Q
    |||||||||||||||||||| |||||||| |||||||||||    
T  19163605 tcgtcctcgtgagcttagctcagttggtatggacaatgcat 19163565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 716 - 755
Target Start/End: Complemental strand, 38204475 - 38204436
Alignment:
Q  716 gtcctcgtgagcttagcttagttggtaaggacaatgcatt 755  Q
    |||||||||||||||||| ||||||||| |||||||||||    
T  38204475 gtcctcgtgagcttagctcagttggtaaagacaatgcatt 38204436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 716 - 754
Target Start/End: Complemental strand, 6314390 - 6314352
Alignment:
Q  716 gtcctcgtgagcttagcttagttggtaaggacaatgcat 754  Q
    |||||||||||||||||| ||||| ||||||||||||||    
T  6314390 gtcctcgtgagcttagctcagttgataaggacaatgcat 6314352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 716 - 754
Target Start/End: Original strand, 11708980 - 11709018
Alignment:
Q  716 gtcctcgtgagcttagcttagttggtaaggacaatgcat 754  Q
    |||||||||||||||||| |||||||| |||||||||||    
T  11708980 gtcctcgtgagcttagctcagttggtagggacaatgcat 11709018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 716 - 754
Target Start/End: Original strand, 19778059 - 19778097
Alignment:
Q  716 gtcctcgtgagcttagcttagttggtaaggacaatgcat 754  Q
    |||| ||||||||||||| ||||||||||||||||||||    
T  19778059 gtccccgtgagcttagctcagttggtaaggacaatgcat 19778097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 716 - 754
Target Start/End: Original strand, 22775622 - 22775660
Alignment:
Q  716 gtcctcgtgagcttagcttagttggtaaggacaatgcat 754  Q
    ||||||||||||||||||||||||||  |||||||||||    
T  22775622 gtcctcgtgagcttagcttagttggtttggacaatgcat 22775660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 716 - 754
Target Start/End: Complemental strand, 27750971 - 27750933
Alignment:
Q  716 gtcctcgtgagcttagcttagttggtaaggacaatgcat 754  Q
    |||||||||||||||||| |||||||||||||| |||||    
T  27750971 gtcctcgtgagcttagctcagttggtaaggacagtgcat 27750933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 713 - 755
Target Start/End: Complemental strand, 30176618 - 30176576
Alignment:
Q  713 ttcgtcctcgtgagcttagcttagttggtaaggacaatgcatt 755  Q
    ||||||| ||||||||||||| |||||||||||||| ||||||    
T  30176618 ttcgtccccgtgagcttagctcagttggtaaggacagtgcatt 30176576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 716 - 754
Target Start/End: Original strand, 32555248 - 32555286
Alignment:
Q  716 gtcctcgtgagcttagcttagttggtaaggacaatgcat 754  Q
    ||||||||||| ||||||||||||||| |||||||||||    
T  32555248 gtcctcgtgagtttagcttagttggtatggacaatgcat 32555286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 716 - 754
Target Start/End: Original strand, 39821878 - 39821916
Alignment:
Q  716 gtcctcgtgagcttagcttagttggtaaggacaatgcat 754  Q
    |||||||||||||||||| |||||||| |||||||||||    
T  39821878 gtcctcgtgagcttagctcagttggtagggacaatgcat 39821916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 716 - 749
Target Start/End: Original strand, 8839824 - 8839857
Alignment:
Q  716 gtcctcgtgagcttagcttagttggtaaggacaa 749  Q
    |||||||||||||||||| |||||||||||||||    
T  8839824 gtcctcgtgagcttagctcagttggtaaggacaa 8839857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 717 - 754
Target Start/End: Complemental strand, 9656063 - 9656026
Alignment:
Q  717 tcctcgtgagcttagcttagttggtaaggacaatgcat 754  Q
    ||||| ||||||||||| ||||||||||||||||||||    
T  9656063 tcctcatgagcttagctcagttggtaaggacaatgcat 9656026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 721 - 754
Target Start/End: Original strand, 13477899 - 13477932
Alignment:
Q  721 cgtgagcttagcttagttggtaaggacaatgcat 754  Q
    ||||||||||||| ||||||||||||||||||||    
T  13477899 cgtgagcttagctgagttggtaaggacaatgcat 13477932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 717 - 754
Target Start/End: Complemental strand, 31466311 - 31466274
Alignment:
Q  717 tcctcgtgagcttagcttagttggtaaggacaatgcat 754  Q
    ||||||||||||||||| |||||||||| |||||||||    
T  31466311 tcctcgtgagcttagctcagttggtaagtacaatgcat 31466274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000006; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 715 - 768
Target Start/End: Complemental strand, 35456889 - 35456836
Alignment:
Q  715 cgtcctcgtgagcttagcttagttggtaaggacaatgcattgatacatgcaagg 768  Q
    ||||||||||||||||||| |||||||||| |||||||||| ||| ||||||||    
T  35456889 cgtcctcgtgagcttagctcagttggtaagaacaatgcattaatatatgcaagg 35456836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 708 - 754
Target Start/End: Original strand, 3708680 - 3708725
Alignment:
Q  708 ttttattcgtcctcgtgagcttagcttagttggtaaggacaatgcat 754  Q
    |||| ||||||||||||||||||||||||||||| ||||||||||||    
T  3708680 ttttcttcgtcctcgtgagcttagcttagttggt-aggacaatgcat 3708725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 708 - 754
Target Start/End: Complemental strand, 11868736 - 11868691
Alignment:
Q  708 ttttattcgtcctcgtgagcttagcttagttggtaaggacaatgcat 754  Q
    |||| ||||||||||||||||||||||||||||| ||||||||||||    
T  11868736 ttttcttcgtcctcgtgagcttagcttagttggt-aggacaatgcat 11868691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 716 - 754
Target Start/End: Complemental strand, 28277743 - 28277705
Alignment:
Q  716 gtcctcgtgagcttagcttagttggtaaggacaatgcat 754  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  28277743 gtcctcgtgagtttagcttagttggtaaggacaatgcat 28277705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 708 - 754
Target Start/End: Complemental strand, 35360129 - 35360084
Alignment:
Q  708 ttttattcgtcctcgtgagcttagcttagttggtaaggacaatgcat 754  Q
    |||| ||||||||||||||||||||||||||||| ||||||||||||    
T  35360129 ttttcttcgtcctcgtgagcttagcttagttggt-aggacaatgcat 35360084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 716 - 754
Target Start/End: Complemental strand, 41187524 - 41187486
Alignment:
Q  716 gtcctcgtgagcttagcttagttggtaaggacaatgcat 754  Q
    ||||||||||||||||||||||||||| |||||||||||    
T  41187524 gtcctcgtgagcttagcttagttggtatggacaatgcat 41187486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 719 - 768
Target Start/End: Complemental strand, 40032932 - 40032883
Alignment:
Q  719 ctcgtgagcttagcttagttggtaaggacaatgcattgatacatgcaagg 768  Q
    ||||||||||||||| |||||||||||||| |||||| ||| ||||||||    
T  40032932 ctcgtgagcttagctcagttggtaaggacagtgcattaatatatgcaagg 40032883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 716 - 768
Target Start/End: Complemental strand, 35820368 - 35820317
Alignment:
Q  716 gtcctcgtgagcttagcttagttggtaaggacaatgcattgatacatgcaagg 768  Q
    |||||||||||||||||| |||||||| |||||||||| | ||||||||||||    
T  35820368 gtcctcgtgagcttagctcagttggtagggacaatgca-taatacatgcaagg 35820317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 715 - 754
Target Start/End: Complemental strand, 41204569 - 41204530
Alignment:
Q  715 cgtcctcgtgagcttagcttagttggtaaggacaatgcat 754  Q
    |||| ||||||||||||||||||||||| |||||||||||    
T  41204569 cgtcatcgtgagcttagcttagttggtatggacaatgcat 41204530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 716 - 754
Target Start/End: Original strand, 7052767 - 7052805
Alignment:
Q  716 gtcctcgtgagcttagcttagttggtaaggacaatgcat 754  Q
    |||| ||||||||||||| ||||||||||||||||||||    
T  7052767 gtccccgtgagcttagctcagttggtaaggacaatgcat 7052805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 716 - 754
Target Start/End: Complemental strand, 9383276 - 9383238
Alignment:
Q  716 gtcctcgtgagcttagcttagttggtaaggacaatgcat 754  Q
    |||||||||||||||||| |||||||| |||||||||||    
T  9383276 gtcctcgtgagcttagctcagttggtatggacaatgcat 9383238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 716 - 754
Target Start/End: Complemental strand, 9842269 - 9842231
Alignment:
Q  716 gtcctcgtgagcttagcttagttggtaaggacaatgcat 754  Q
    |||||||||||||||||| |||||||| |||||||||||    
T  9842269 gtcctcgtgagcttagctcagttggtagggacaatgcat 9842231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 716 - 754
Target Start/End: Complemental strand, 14735960 - 14735922
Alignment:
Q  716 gtcctcgtgagcttagcttagttggtaaggacaatgcat 754  Q
    |||||||||||||||||||| |||||| |||||||||||    
T  14735960 gtcctcgtgagcttagcttaattggtatggacaatgcat 14735922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 716 - 754
Target Start/End: Complemental strand, 18231540 - 18231502
Alignment:
Q  716 gtcctcgtgagcttagcttagttggtaaggacaatgcat 754  Q
    |||| ||||||||||||| ||||||||||||||||||||    
T  18231540 gtccccgtgagcttagctcagttggtaaggacaatgcat 18231502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 716 - 754
Target Start/End: Complemental strand, 19179117 - 19179079
Alignment:
Q  716 gtcctcgtgagcttagcttagttggtaaggacaatgcat 754  Q
    |||| ||||||||||||| ||||||||||||||||||||    
T  19179117 gtccccgtgagcttagctcagttggtaaggacaatgcat 19179079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 716 - 754
Target Start/End: Original strand, 25625131 - 25625169
Alignment:
Q  716 gtcctcgtgagcttagcttagttggtaaggacaatgcat 754  Q
    |||| ||||||||||||| ||||||||||||||||||||    
T  25625131 gtccacgtgagcttagctcagttggtaaggacaatgcat 25625169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 716 - 750
Target Start/End: Complemental strand, 27934924 - 27934890
Alignment:
Q  716 gtcctcgtgagcttagcttagttggtaaggacaat 750  Q
    |||||||||||||||||| ||||||||||||||||    
T  27934924 gtcctcgtgagcttagctcagttggtaaggacaat 27934890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 716 - 754
Target Start/End: Original strand, 44526122 - 44526160
Alignment:
Q  716 gtcctcgtgagcttagcttagttggtaaggacaatgcat 754  Q
    |||||||||||||||||| |||||||| |||||||||||    
T  44526122 gtcctcgtgagcttagctcagttggtatggacaatgcat 44526160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 721 - 754
Target Start/End: Complemental strand, 7413251 - 7413218
Alignment:
Q  721 cgtgagcttagcttagttggtaaggacaatgcat 754  Q
    ||||||||||||| ||||||||||||||||||||    
T  7413251 cgtgagcttagctcagttggtaaggacaatgcat 7413218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 717 - 754
Target Start/End: Complemental strand, 9752163 - 9752126
Alignment:
Q  717 tcctcgtgagcttagcttagttggtaaggacaatgcat 754  Q
    ||||||||||| ||||| ||||||||||||||||||||    
T  9752163 tcctcgtgagcatagctcagttggtaaggacaatgcat 9752126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 717 - 754
Target Start/End: Complemental strand, 10332341 - 10332304
Alignment:
Q  717 tcctcgtgagcttagcttagttggtaaggacaatgcat 754  Q
    ||||||||||||||||| ||||| ||||||||||||||    
T  10332341 tcctcgtgagcttagctcagttgataaggacaatgcat 10332304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 719 - 768
Target Start/End: Complemental strand, 13395046 - 13394998
Alignment:
Q  719 ctcgtgagcttagcttagttggtaaggacaatgcattgatacatgcaagg 768  Q
    ||||||||||||||| |||||||| |||||||||| ||||| ||||||||    
T  13395046 ctcgtgagcttagctcagttggtagggacaatgca-tgatatatgcaagg 13394998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 721 - 754
Target Start/End: Original strand, 24593375 - 24593408
Alignment:
Q  721 cgtgagcttagcttagttggtaaggacaatgcat 754  Q
    ||||||||||||| ||||||||||||||||||||    
T  24593375 cgtgagcttagctcagttggtaaggacaatgcat 24593408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 716 - 753
Target Start/End: Complemental strand, 41542867 - 41542830
Alignment:
Q  716 gtcctcgtgagcttagcttagttggtaaggacaatgca 753  Q
    ||||||||||||||| || |||||||||||||||||||    
T  41542867 gtcctcgtgagcttaactcagttggtaaggacaatgca 41542830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 717 - 754
Target Start/End: Complemental strand, 41939174 - 41939137
Alignment:
Q  717 tcctcgtgagcttagcttagttggtaaggacaatgcat 754  Q
    |||||||||||||||||||||||||| ||| |||||||    
T  41939174 tcctcgtgagcttagcttagttggtagggataatgcat 41939137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000009; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 707 - 754
Target Start/End: Original strand, 7868707 - 7868754
Alignment:
Q  707 gttttattcgtcctcgtgagcttagcttagttggtaaggacaatgcat 754  Q
    ||||||| ||||||||||||||||||| |||||||||| |||||||||    
T  7868707 gttttatgcgtcctcgtgagcttagctcagttggtaagaacaatgcat 7868754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 717 - 768
Target Start/End: Complemental strand, 12043163 - 12043112
Alignment:
Q  717 tcctcgtgagcttagcttagttggtaaggacaatgcattgatacatgcaagg 768  Q
    |||||||||||||| || ||||||||||||||||||||| ||| ||||||||    
T  12043163 tcctcgtgagcttaactcagttggtaaggacaatgcattaatatatgcaagg 12043112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 708 - 754
Target Start/End: Original strand, 916426 - 916471
Alignment:
Q  708 ttttattcgtcctcgtgagcttagcttagttggtaaggacaatgcat 754  Q
    |||| ||||||||||||||||||||||||||||| ||||||||||||    
T  916426 ttttcttcgtcctcgtgagcttagcttagttggt-aggacaatgcat 916471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 716 - 754
Target Start/End: Complemental strand, 1149136 - 1149098
Alignment:
Q  716 gtcctcgtgagcttagcttagttggtaaggacaatgcat 754  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  1149136 gtcctcgtgagcttagctcagttggtaaggacaatgcat 1149098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 716 - 754
Target Start/End: Complemental strand, 16980421 - 16980383
Alignment:
Q  716 gtcctcgtgagcttagcttagttggtaaggacaatgcat 754  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  16980421 gtcctcgtgagcttagctcagttggtaaggacaatgcat 16980383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 721 - 754
Target Start/End: Original strand, 21245792 - 21245825
Alignment:
Q  721 cgtgagcttagcttagttggtaaggacaatgcat 754  Q
    ||||||||||||||||||||||||||||||||||    
T  21245792 cgtgagcttagcttagttggtaaggacaatgcat 21245825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 716 - 755
Target Start/End: Original strand, 53706818 - 53706857
Alignment:
Q  716 gtcctcgtgagcttagcttagttggtaaggacaatgcatt 755  Q
    ||||||||||||||| |||| |||||||||||||||||||    
T  53706818 gtcctcgtgagcttaacttaattggtaaggacaatgcatt 53706857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 716 - 754
Target Start/End: Original strand, 8127457 - 8127495
Alignment:
Q  716 gtcctcgtgagcttagcttagttggtaaggacaatgcat 754  Q
    ||||||||||||||| || ||||||||||||||||||||    
T  8127457 gtcctcgtgagcttaactcagttggtaaggacaatgcat 8127495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 716 - 754
Target Start/End: Complemental strand, 10498762 - 10498724
Alignment:
Q  716 gtcctcgtgagcttagcttagttggtaaggacaatgcat 754  Q
    |||||||||||||||||| |||||||| |||||||||||    
T  10498762 gtcctcgtgagcttagctcagttggtatggacaatgcat 10498724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 716 - 754
Target Start/End: Original strand, 10926463 - 10926501
Alignment:
Q  716 gtcctcgtgagcttagcttagttggtaaggacaatgcat 754  Q
    |||||||| ||||||||| ||||||||||||||||||||    
T  10926463 gtcctcgtaagcttagctcagttggtaaggacaatgcat 10926501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 716 - 754
Target Start/End: Complemental strand, 18870792 - 18870754
Alignment:
Q  716 gtcctcgtgagcttagcttagttggtaaggacaatgcat 754  Q
    |||||||||||||||||| |||||||| |||||||||||    
T  18870792 gtcctcgtgagcttagctcagttggtagggacaatgcat 18870754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 716 - 754
Target Start/End: Complemental strand, 21506825 - 21506787
Alignment:
Q  716 gtcctcgtgagcttagcttagttggtaaggacaatgcat 754  Q
    |||||||||||||||||| |||||||| |||||||||||    
T  21506825 gtcctcgtgagcttagctcagttggtatggacaatgcat 21506787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 716 - 754
Target Start/End: Complemental strand, 35191884 - 35191846
Alignment:
Q  716 gtcctcgtgagcttagcttagttggtaaggacaatgcat 754  Q
    ||||||||| |||||||| ||||||||||||||||||||    
T  35191884 gtcctcgtgcgcttagctcagttggtaaggacaatgcat 35191846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 716 - 754
Target Start/End: Original strand, 39481135 - 39481173
Alignment:
Q  716 gtcctcgtgagcttagcttagttggtaaggacaatgcat 754  Q
    |||||||||||||||||| |||||||| |||||||||||    
T  39481135 gtcctcgtgagcttagctcagttggtatggacaatgcat 39481173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 715 - 753
Target Start/End: Complemental strand, 44447229 - 44447191
Alignment:
Q  715 cgtcctcgtgagcttagcttagttggtaaggacaatgca 753  Q
    |||||||||||||||||||||||||||| | ||||||||    
T  44447229 cgtcctcgtgagcttagcttagttggtatgaacaatgca 44447191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 716 - 754
Target Start/End: Original strand, 44579630 - 44579668
Alignment:
Q  716 gtcctcgtgagcttagcttagttggtaaggacaatgcat 754  Q
    |||||||||||||||||| |||||||| |||||||||||    
T  44579630 gtcctcgtgagcttagctcagttggtatggacaatgcat 44579668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 716 - 754
Target Start/End: Complemental strand, 48315091 - 48315053
Alignment:
Q  716 gtcctcgtgagcttagcttagttggtaaggacaatgcat 754  Q
    |||||||||||||||||| |||||||||||| |||||||    
T  48315091 gtcctcgtgagcttagctcagttggtaaggataatgcat 48315053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 716 - 754
Target Start/End: Complemental strand, 52904210 - 52904172
Alignment:
Q  716 gtcctcgtgagcttagcttagttggtaaggacaatgcat 754  Q
    ||||||||||| |||||| ||||||||||||||||||||    
T  52904210 gtcctcgtgaggttagctcagttggtaaggacaatgcat 52904172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 721 - 754
Target Start/End: Complemental strand, 8113624 - 8113591
Alignment:
Q  721 cgtgagcttagcttagttggtaaggacaatgcat 754  Q
    ||||||||||||| ||||||||||||||||||||    
T  8113624 cgtgagcttagctcagttggtaaggacaatgcat 8113591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 717 - 754
Target Start/End: Original strand, 8139710 - 8139747
Alignment:
Q  717 tcctcgtgagcttagcttagttggtaaggacaatgcat 754  Q
    ||||||||||||||| |||||||||| |||||||||||    
T  8139710 tcctcgtgagcttagtttagttggtatggacaatgcat 8139747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 717 - 754
Target Start/End: Complemental strand, 25340990 - 25340953
Alignment:
Q  717 tcctcgtgagcttagcttagttggtaaggacaatgcat 754  Q
    ||||||||||||||||| |||||||| |||||||||||    
T  25340990 tcctcgtgagcttagctcagttggtatggacaatgcat 25340953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 714 - 751
Target Start/End: Original strand, 33771682 - 33771719
Alignment:
Q  714 tcgtcctcgtgagcttagcttagttggtaaggacaatg 751  Q
    ||||||||||||||||| || |||||||||||||||||    
T  33771682 tcgtcctcgtgagcttaactcagttggtaaggacaatg 33771719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 721 - 754
Target Start/End: Original strand, 41258970 - 41259003
Alignment:
Q  721 cgtgagcttagcttagttggtaaggacaatgcat 754  Q
    ||||||||||| ||||||||||||||||||||||    
T  41258970 cgtgagcttagtttagttggtaaggacaatgcat 41259003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 721 - 754
Target Start/End: Original strand, 46469276 - 46469309
Alignment:
Q  721 cgtgagcttagcttagttggtaaggacaatgcat 754  Q
    ||||||||||||| ||||||||||||||||||||    
T  46469276 cgtgagcttagctcagttggtaaggacaatgcat 46469309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000004; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 708 - 754
Target Start/End: Complemental strand, 19036176 - 19036131
Alignment:
Q  708 ttttattcgtcctcgtgagcttagcttagttggtaaggacaatgcat 754  Q
    |||| ||||||||||||||||||||||||||||| ||||||||||||    
T  19036176 ttttcttcgtcctcgtgagcttagcttagttggt-aggacaatgcat 19036131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 708 - 754
Target Start/End: Original strand, 20718460 - 20718505
Alignment:
Q  708 ttttattcgtcctcgtgagcttagcttagttggtaaggacaatgcat 754  Q
    |||| ||||||||||||||||||||||||||||| ||||||||||||    
T  20718460 ttttcttcgtcctcgtgagcttagcttagttggt-aggacaatgcat 20718505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 708 - 754
Target Start/End: Original strand, 20763141 - 20763186
Alignment:
Q  708 ttttattcgtcctcgtgagcttagcttagttggtaaggacaatgcat 754  Q
    |||| ||||||||||||||||||||||||||||| ||||||||||||    
T  20763141 ttttcttcgtcctcgtgagcttagcttagttggt-aggacaatgcat 20763186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 708 - 754
Target Start/End: Original strand, 29488707 - 29488752
Alignment:
Q  708 ttttattcgtcctcgtgagcttagcttagttggtaaggacaatgcat 754  Q
    |||| ||||||||||||||||||||||||||||| ||||||||||||    
T  29488707 ttttcttcgtcctcgtgagcttagcttagttggt-aggacaatgcat 29488752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 708 - 754
Target Start/End: Complemental strand, 33232471 - 33232426
Alignment:
Q  708 ttttattcgtcctcgtgagcttagcttagttggtaaggacaatgcat 754  Q
    |||| ||||||||||||||||||||||||||||| ||||||||||||    
T  33232471 ttttcttcgtcctcgtgagcttagcttagttggt-aggacaatgcat 33232426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 708 - 754
Target Start/End: Complemental strand, 34284613 - 34284568
Alignment:
Q  708 ttttattcgtcctcgtgagcttagcttagttggtaaggacaatgcat 754  Q
    |||| ||||||||||||||||||||||||||||| ||||||||||||    
T  34284613 ttttcttcgtcctcgtgagcttagcttagttggt-aggacaatgcat 34284568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 717 - 754
Target Start/End: Original strand, 41527555 - 41527592
Alignment:
Q  717 tcctcgtgagcttagcttagttggtaaggacaatgcat 754  Q
    |||||||||||||||||||||||||| |||||||||||    
T  41527555 tcctcgtgagcttagcttagttggtatggacaatgcat 41527592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 716 - 795
Target Start/End: Original strand, 10244721 - 10244797
Alignment:
Q  716 gtcctcgtgagcttagcttagttggtaaggacaatgcattgatacatgcaagggtcccggagttcaaccccggccaccac 795  Q
    |||||||||||||||||| |||||||| |||||||||| | ||| ||||||||   |||| |||||| ||||||||||||    
T  10244721 gtcctcgtgagcttagctcagttggtatggacaatgca-taatatatgcaagg--tccggggttcaaacccggccaccac 10244797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 716 - 754
Target Start/End: Original strand, 3584198 - 3584236
Alignment:
Q  716 gtcctcgtgagcttagcttagttggtaaggacaatgcat 754  Q
    ||||||| ||||||| |||||||||||||||||||||||    
T  3584198 gtcctcgcgagcttaacttagttggtaaggacaatgcat 3584236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 716 - 750
Target Start/End: Original strand, 5352323 - 5352357
Alignment:
Q  716 gtcctcgtgagcttagcttagttggtaaggacaat 750  Q
    |||||||||||||||||| ||||||||||||||||    
T  5352323 gtcctcgtgagcttagctcagttggtaaggacaat 5352357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 716 - 754
Target Start/End: Original strand, 5526719 - 5526757
Alignment:
Q  716 gtcctcgtgagcttagcttagttggtaaggacaatgcat 754  Q
    |||||||||||||||||| |||||||| |||||||||||    
T  5526719 gtcctcgtgagcttagctcagttggtatggacaatgcat 5526757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 720 - 754
Target Start/End: Complemental strand, 13044205 - 13044171
Alignment:
Q  720 tcgtgagcttagcttagttggtaaggacaatgcat 754  Q
    |||||||||||||| ||||||||||||||||||||    
T  13044205 tcgtgagcttagctcagttggtaaggacaatgcat 13044171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 716 - 754
Target Start/End: Original strand, 19416508 - 19416546
Alignment:
Q  716 gtcctcgtgagcttagcttagttggtaaggacaatgcat 754  Q
    |||||||||||||||||| |||||||| |||||||||||    
T  19416508 gtcctcgtgagcttagctcagttggtatggacaatgcat 19416546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 716 - 754
Target Start/End: Original strand, 20243249 - 20243287
Alignment:
Q  716 gtcctcgtgagcttagcttagttggtaaggacaatgcat 754  Q
    |||||||||||||||||| |||||||| |||||||||||    
T  20243249 gtcctcgtgagcttagctcagttggtatggacaatgcat 20243287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 720 - 754
Target Start/End: Complemental strand, 23863763 - 23863729
Alignment:
Q  720 tcgtgagcttagcttagttggtaaggacaatgcat 754  Q
    ||||||||||| |||||||||||||||||||||||    
T  23863763 tcgtgagcttaacttagttggtaaggacaatgcat 23863729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 716 - 754
Target Start/End: Original strand, 30857242 - 30857280
Alignment:
Q  716 gtcctcgtgagcttagcttagttggtaaggacaatgcat 754  Q
    ||||||||||| ||||||||||||||| |||||||||||    
T  30857242 gtcctcgtgagtttagcttagttggtatggacaatgcat 30857280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 716 - 754
Target Start/End: Complemental strand, 31038589 - 31038551
Alignment:
Q  716 gtcctcgtgagcttagcttagttggtaaggacaatgcat 754  Q
    |||||||||||||||||| |||||||| |||||||||||    
T  31038589 gtcctcgtgagcttagctcagttggtatggacaatgcat 31038551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 716 - 754
Target Start/End: Original strand, 37930038 - 37930076
Alignment:
Q  716 gtcctcgtgagcttagcttagttggtaaggacaatgcat 754  Q
    ||||||||||||||| || ||||||||||||||||||||    
T  37930038 gtcctcgtgagcttatctcagttggtaaggacaatgcat 37930076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 716 - 754
Target Start/End: Original strand, 38728202 - 38728240
Alignment:
Q  716 gtcctcgtgagcttagcttagttggtaaggacaatgcat 754  Q
    |||||||||||||||||| |||||||| |||||||||||    
T  38728202 gtcctcgtgagcttagctcagttggtatggacaatgcat 38728240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 716 - 754
Target Start/End: Original strand, 39801700 - 39801738
Alignment:
Q  716 gtcctcgtgagcttagcttagttggtaaggacaatgcat 754  Q
    |||||||||||||||||| |||||||| |||||||||||    
T  39801700 gtcctcgtgagcttagctcagttggtatggacaatgcat 39801738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 716 - 754
Target Start/End: Original strand, 48980481 - 48980519
Alignment:
Q  716 gtcctcgtgagcttagcttagttggtaaggacaatgcat 754  Q
    |||||||||||||||||| |||||||| |||||||||||    
T  48980481 gtcctcgtgagcttagctcagttggtatggacaatgcat 48980519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 721 - 754
Target Start/End: Complemental strand, 1398459 - 1398426
Alignment:
Q  721 cgtgagcttagcttagttggtaaggacaatgcat 754  Q
    ||||||||||||| ||||||||||||||||||||    
T  1398459 cgtgagcttagctcagttggtaaggacaatgcat 1398426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 716 - 749
Target Start/End: Complemental strand, 38088084 - 38088051
Alignment:
Q  716 gtcctcgtgagcttagcttagttggtaaggacaa 749  Q
    |||||||||||||||||| |||||||||||||||    
T  38088084 gtcctcgtgagcttagctcagttggtaaggacaa 38088051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000004; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 708 - 754
Target Start/End: Original strand, 247646 - 247691
Alignment:
Q  708 ttttattcgtcctcgtgagcttagcttagttggtaaggacaatgcat 754  Q
    |||| ||||||||||||||||||||||||||||| ||||||||||||    
T  247646 ttttcttcgtcctcgtgagcttagcttagttggt-aggacaatgcat 247691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 708 - 754
Target Start/End: Original strand, 33976231 - 33976276
Alignment:
Q  708 ttttattcgtcctcgtgagcttagcttagttggtaaggacaatgcat 754  Q
    |||| ||||||||||||||||||||||||||||| ||||||||||||    
T  33976231 ttttcttcgtcctcgtgagcttagcttagttggt-aggacaatgcat 33976276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 716 - 768
Target Start/End: Original strand, 9333725 - 9333776
Alignment:
Q  716 gtcctcgtgagcttagcttagttggtaaggacaatgcattgatacatgcaagg 768  Q
    |||||||||||||||||| | ||||||||||||||||||| ||| ||||||||    
T  9333725 gtcctcgtgagcttagctcaattggtaaggacaatgcatt-atatatgcaagg 9333776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 715 - 754
Target Start/End: Complemental strand, 7083060 - 7083021
Alignment:
Q  715 cgtcctcgtgagcttagcttagttggtaaggacaatgcat 754  Q
    ||||||||||||||||||| | ||||||||||||||||||    
T  7083060 cgtcctcgtgagcttagctcaattggtaaggacaatgcat 7083021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 716 - 751
Target Start/End: Complemental strand, 15291757 - 15291722
Alignment:
Q  716 gtcctcgtgagcttagcttagttggtaaggacaatg 751  Q
    ||||||||||||||| ||||||||||||||||||||    
T  15291757 gtcctcgtgagcttaacttagttggtaaggacaatg 15291722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 720 - 754
Target Start/End: Original strand, 404161 - 404195
Alignment:
Q  720 tcgtgagcttagcttagttggtaaggacaatgcat 754  Q
    ||||||||||| |||||||||||||||||||||||    
T  404161 tcgtgagcttaacttagttggtaaggacaatgcat 404195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 716 - 754
Target Start/End: Original strand, 788860 - 788898
Alignment:
Q  716 gtcctcgtgagcttagcttagttggtaaggacaatgcat 754  Q
    ||||||||||||||| || ||||||||||||||||||||    
T  788860 gtcctcgtgagcttatctcagttggtaaggacaatgcat 788898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 720 - 766
Target Start/End: Complemental strand, 3863397 - 3863351
Alignment:
Q  720 tcgtgagcttagcttagttggtaaggacaatgcattgatacatgcaa 766  Q
    ||||||||||| || ||||||||||||||||||||| ||| ||||||    
T  3863397 tcgtgagcttaactcagttggtaaggacaatgcattaatatatgcaa 3863351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 716 - 754
Target Start/End: Complemental strand, 4494938 - 4494900
Alignment:
Q  716 gtcctcgtgagcttagcttagttggtaaggacaatgcat 754  Q
    |||||||||||||||||| |||||||| |||||||||||    
T  4494938 gtcctcgtgagcttagctcagttggtatggacaatgcat 4494900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 708 - 754
Target Start/End: Complemental strand, 12582303 - 12582258
Alignment:
Q  708 ttttattcgtcctcgtgagcttagcttagttggtaaggacaatgcat 754  Q
    |||| |||||||| |||||||||||||||||||| ||||||||||||    
T  12582303 ttttcttcgtccttgtgagcttagcttagttggt-aggacaatgcat 12582258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 720 - 754
Target Start/End: Original strand, 16130763 - 16130797
Alignment:
Q  720 tcgtgagcttagcttagttggtaaggacaatgcat 754  Q
    ||||||||||||||||||||||| |||||||||||    
T  16130763 tcgtgagcttagcttagttggtatggacaatgcat 16130797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 716 - 754
Target Start/End: Complemental strand, 16890515 - 16890477
Alignment:
Q  716 gtcctcgtgagcttagcttagttggtaaggacaatgcat 754  Q
    ||||||||||||||| ||||||||||| |||||||||||    
T  16890515 gtcctcgtgagcttaacttagttggtatggacaatgcat 16890477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 722 - 768
Target Start/End: Complemental strand, 18254162 - 18254117
Alignment:
Q  722 gtgagcttagcttagttggtaaggacaatgcattgatacatgcaagg 768  Q
    |||||||||||| ||||||||||||||||||| | ||||||||||||    
T  18254162 gtgagcttagctcagttggtaaggacaatgca-taatacatgcaagg 18254117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 716 - 754
Target Start/End: Original strand, 18256877 - 18256915
Alignment:
Q  716 gtcctcgtgagcttagcttagttggtaaggacaatgcat 754  Q
    |||||||||||||||||| ||||| ||||||||||||||    
T  18256877 gtcctcgtgagcttagctcagttgataaggacaatgcat 18256915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 716 - 754
Target Start/End: Original strand, 28898850 - 28898888
Alignment:
Q  716 gtcctcgtgagcttagcttagttggtaaggacaatgcat 754  Q
    |||||||||| |||| |||||||||||||||||||||||    
T  28898850 gtcctcgtgatcttaacttagttggtaaggacaatgcat 28898888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 716 - 754
Target Start/End: Original strand, 32053782 - 32053820
Alignment:
Q  716 gtcctcgtgagcttagcttagttggtaaggacaatgcat 754  Q
    |||||||||||||||||| |||||||| |||||||||||    
T  32053782 gtcctcgtgagcttagctcagttggtatggacaatgcat 32053820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 717 - 766
Target Start/End: Complemental strand, 10772362 - 10772313
Alignment:
Q  717 tcctcgtgagcttagcttagttggtaaggacaatgcattgatacatgcaa 766  Q
    |||||||||| |||| | ||||||||| ||||||||||||||| ||||||    
T  10772362 tcctcgtgagtttagttcagttggtaaagacaatgcattgatatatgcaa 10772313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 717 - 754
Target Start/End: Original strand, 20744133 - 20744170
Alignment:
Q  717 tcctcgtgagcttagcttagttggtaaggacaatgcat 754  Q
    ||||||||||||||||| |||||||| |||||||||||    
T  20744133 tcctcgtgagcttagctcagttggtatggacaatgcat 20744170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0098 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 716 - 754
Target Start/End: Original strand, 5419 - 5457
Alignment:
Q  716 gtcctcgtgagcttagcttagttggtaaggacaatgcat 754  Q
    |||||||||||||||||| |||||||||| |||||||||    
T  5419 gtcctcgtgagcttagctcagttggtaagaacaatgcat 5457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 716 - 754
Target Start/End: Original strand, 185257 - 185295
Alignment:
Q  716 gtcctcgtgagcttagcttagttggtaaggacaatgcat 754  Q
    |||||||||||||||||| |||||||| |||||||||||    
T  185257 gtcctcgtgagcttagctcagttggtatggacaatgcat 185295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 716 - 754
Target Start/End: Original strand, 239801 - 239839
Alignment:
Q  716 gtcctcgtgagcttagcttagttggtaaggacaatgcat 754  Q
    ||||||||||| |||||| ||||||||||||||||||||    
T  239801 gtcctcgtgagtttagctcagttggtaaggacaatgcat 239839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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