View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1859R-Insertion-3 (Length: 959)

Name: NF1859R-Insertion-3
Description: NF1859R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1859R-Insertion-3
NF1859R-Insertion-3
[»] chr5 (5 HSPs)
chr5 (8-462)||(2752176-2752631)
chr5 (645-959)||(2752623-2752941)
chr5 (488-624)||(16398560-16398694)
chr5 (585-638)||(41007456-41007509)
chr5 (555-600)||(6075213-6075258)
[»] chr4 (7 HSPs)
chr4 (463-627)||(7593045-7593208)
chr4 (523-638)||(8019929-8020043)
chr4 (502-637)||(8854106-8854240)
chr4 (505-576)||(7921230-7921300)
chr4 (578-630)||(7921042-7921094)
chr4 (523-621)||(8019488-8019585)
chr4 (578-638)||(36118166-36118226)
[»] chr3 (4 HSPs)
chr3 (512-637)||(36494897-36495021)
chr3 (521-641)||(36881088-36881207)
chr3 (556-632)||(3177544-3177620)
chr3 (560-636)||(18475527-18475601)
[»] chr7 (6 HSPs)
chr7 (523-637)||(3971544-3971657)
chr7 (555-637)||(43701453-43701535)
chr7 (552-599)||(30044641-30044688)
chr7 (561-608)||(29991654-29991701)
chr7 (563-601)||(43119253-43119291)
chr7 (556-638)||(49013039-49013121)
[»] chr1 (4 HSPs)
chr1 (490-637)||(14362162-14362310)
chr1 (556-636)||(35909727-35909806)
chr1 (496-629)||(41806524-41806653)
chr1 (513-615)||(12802139-12802240)
[»] chr2 (4 HSPs)
chr2 (513-639)||(26674104-26674229)
chr2 (555-638)||(3960848-3960931)
chr2 (556-638)||(14952465-14952547)
chr2 (556-638)||(22311673-22311755)
[»] chr6 (2 HSPs)
chr6 (505-626)||(10367664-10367784)
chr6 (555-601)||(21917389-21917435)
[»] chr8 (3 HSPs)
chr8 (570-638)||(3760590-3760658)
chr8 (490-599)||(18555328-18555436)
chr8 (578-637)||(31678635-31678694)


Alignment Details
Target: chr5 (Bit Score: 420; Significance: 0; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 8 - 462
Target Start/End: Original strand, 2752176 - 2752631
Alignment:
Q  8 aaaaatcaaacacagatttttgttgaccgattgtttcaggggtcatgctaaaacctgagatgagaagagaataactgaagggttatagttgaagtcaaac 107  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  2752176 aaaaatcaaacacagatttttgttcaccgattgtttcaggggtcatgctaaaacctgagatgagaagagaataactgaagggttatagttgaagtgaaac 2752275  T
Q  108 ttagattacaagttacaataactgattcaattttaagaatccaacactgaaatctttgtctgattatggtttcacacgtggtgggatttttgtcgtatca 207  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2752276 ttagcttacaagttacaataactgattcaattttaagaatccaacactgaaatctttgtctgattatggtttcacacgtggtgggatttttgtcgtatca 2752375  T
Q  208 attttaagaatccaacactgaaatctttgtccaattattactatagattacgggtgtgatgcctccaaacacgtccaga-ttttttctgcattttcatct 306  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||    
T  2752376 attttaagaatccaacgctgaaatctttgtccaattattactatagattacgggtgtgatgcctccaaacccgtccagatttttttctgcattttcatct 2752475  T
Q  307 atcttgttttacgtctttacacctcaatattaattcaaaacctacaaaattagtactcaaattgaagggaattgagtgtagtttacataaattcaatcat 406  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  2752476 atcttgttttacgtctttacacctcaatattaattcaaaacctacaaaattagtactcaaattgaagggaattgagtgtagtttgcataaattcaatcat 2752575  T
Q  407 atagttgctaggaggtacacataaatggccgtgatccaattagtacagacatagcc 462  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  2752576 atagttgctaggaggtacacataaatggccgtgatccaattaatacagacatagcc 2752631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 277; E-Value: 1e-154
Query Start/End: Original strand, 645 - 959
Target Start/End: Original strand, 2752623 - 2752941
Alignment:
Q  645 gacatagccataaaacaatcatttcttgtgcaacacactaatagttaccccattttctctacaaaattggcatgacaatccatataatgacatctttgaa 744  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2752623 gacatagccataaaacaatcatttcttgtgcaacacactaatagttaccccattttctctacaaaattggcatgacaatccatataatgacatctttgaa 2752722  T
Q  745 tctaacattaaacatcttgcatgcatacgtaaatcataaaattaccaaaattgaataatcatg-----aaatcaaaatgtaagtggagaaatcctgttac 839  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     ||||||||||||||||||||||||||||||||    
T  2752723 tctaacattaaacatcttgcatgcatacgtaaatcataaaattaccaaaattgaataatcatgaaatcaaatcaaaatgtaagtggagaaatcctgttac 2752822  T
Q  840 atttatttttgcccaaagtagaattgatagactttccaacacccatggtggctctaatctttccaatggcgatattttttctctttccttctttcattcc 939  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  2752823 atttatttttgcccaaagtagaattgatagactttccaacacccatggtggctctaatctttccaatggcgata-tttttctctttccttctttcattcc 2752921  T
Q  940 -tctccctcggaattctcttc 959  Q
     |||||||||| |||||||||    
T  2752922 ttctccctcgg-attctcttc 2752941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 488 - 624
Target Start/End: Original strand, 16398560 - 16398694
Alignment:
Q  488 ttctctcaatttgttcaattaccaaagttttggtttataaatatgcaattaatgtcttcaattctttgaaatgtgtgcatttatatcatatatttacttc 587  Q
    ||||||| |||||||| || | ||||||| || | |||||||||  |||| ||||||  ||||||  |||||||||   ||||||||||||||||| |||    
T  16398560 ttctctccatttgttccatgatcaaagttgtgctgtataaatattaaattgatgtctctaattcta-gaaatgtgttt-tttatatcatatatttatttc 16398657  T
Q  588 aaaactatagtaattgacatttccattttatttagga 624  Q
    ||||||||| |||| |||||||| |||||||||||||    
T  16398658 aaaactataataatggacatttctattttatttagga 16398694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 585 - 638
Target Start/End: Complemental strand, 41007509 - 41007456
Alignment:
Q  585 ttcaaaactatagtaattgacatttccattttatttaggaaatggagaggatct 638  Q
    ||||||| |||||| ||| |||||||||||||||||| |||||||||| |||||    
T  41007509 ttcaaaattatagtcattaacatttccattttatttaagaaatggagaagatct 41007456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 555 - 600
Target Start/End: Complemental strand, 6075258 - 6075213
Alignment:
Q  555 gaaatgtgtgcatttatatcatatatttacttcaaaactatagtaa 600  Q
    ||||| |||||||||||||||| |||||| || |||||||||||||    
T  6075258 gaaatatgtgcatttatatcatttatttattttaaaactatagtaa 6075213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 145; Significance: 8e-76; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 145; E-Value: 8e-76
Query Start/End: Original strand, 463 - 627
Target Start/End: Original strand, 7593045 - 7593208
Alignment:
Q  463 gggtgaagatcctctccattttaagttctctcaatttgttcaattaccaaagttttggtttataaatatgcaattaatgtcttcaattctttgaaatgtg 562  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||    
T  7593045 gggtgaagatcctctccattttaagttctctcaatttgttccattaccaaagttttggtgtataaatatgcaattaatgtcttcaattc-ttgaaatgtg 7593143  T
Q  563 tgcatttatatcatatatttacttcaaaactatagtaattgacatttccattttatttaggaaat 627  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  7593144 tgcatttatatcatatatttacttcaaaactatagtaattaacatttccattttatttaggaaat 7593208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 523 - 638
Target Start/End: Original strand, 8019929 - 8020043
Alignment:
Q  523 tataaatatgcaattaatgtcttcaattctttgaaatgtgtgcatttatatcatatatttacttcaaaactatagtaattgacatttccattttatttag 622  Q
    ||||||||| ||||||||||| |  |||||  ||||| |||||||||||||||| ||||||| ||||||||||||||||  ||||| ||||||  |||||    
T  8019929 tataaatattcaattaatgtcatatattcta-gaaatatgtgcatttatatcatgtatttacatcaaaactatagtaatgaacattgccatttattttag 8020027  T
Q  623 gaaatggagaggatct 638  Q
     |||| ||||||||||    
T  8020028 aaaattgagaggatct 8020043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 502 - 637
Target Start/End: Original strand, 8854106 - 8854240
Alignment:
Q  502 tcaattaccaaagttttggtttataaatatgcaattaatgtcttcaattctttgaaatgtgtgcatttatatcatatatttacttcaaaactatagtaat 601  Q
    |||||||| ||||||||||  ||||||| |  ||| ||| ||  ||||| ||||||||||||||||||||||||| ||||||||  ||||||| ||||||    
T  8854106 tcaattactaaagttttggagtataaatgtttaataaatatcaccaatt-tttgaaatgtgtgcatttatatcatttatttactctaaaactacagtaat 8854204  T
Q  602 tgacatttccattttatttaggaaatggagaggatc 637  Q
     ||||  |||||||  |||  |||||||||||||||    
T  8854205 ggacacctccatttattttgagaaatggagaggatc 8854240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 505 - 576
Target Start/End: Complemental strand, 7921300 - 7921230
Alignment:
Q  505 attaccaaagttttggtttataaatatgcaattaatgtcttcaattctttgaaatgtgtgcatttatatcat 576  Q
    ||||||||||||||| | ||||||| | |||||||||||||||||| || |||||||||||||| |||||||    
T  7921300 attaccaaagttttgatatataaatgtccaattaatgtcttcaatt-ttagaaatgtgtgcattaatatcat 7921230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 578 - 630
Target Start/End: Complemental strand, 7921094 - 7921042
Alignment:
Q  578 tatttacttcaaaactatagtaattgacatttccattttatttaggaaatgga 630  Q
    |||||| |||||||||| || |||| |||||||||||||||||||||||||||    
T  7921094 tatttagttcaaaactaaagaaatttacatttccattttatttaggaaatgga 7921042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 523 - 621
Target Start/End: Original strand, 8019488 - 8019585
Alignment:
Q  523 tataaatatgcaattaatgtcttcaattctttgaaatgtgtgcatttatatcatatatttacttcaaaactatagtaattgacatttccattttattta 621  Q
    ||||||||| ||||||||||| |  |||||  ||||| || ||||||| ||||| ||||||| ||||||||||||||||  ||||| |||||| |||||    
T  8019488 tataaatattcaattaatgtcatatattcta-gaaatatgagcatttacatcatgtatttacatcaaaactatagtaatgaacattgccatttaattta 8019585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 578 - 638
Target Start/End: Original strand, 36118166 - 36118226
Alignment:
Q  578 tatttacttcaaaactatagtaattgacatttccattttatttaggaaatggagaggatct 638  Q
    |||||| ||||||| |||| |||||||||||||||||||| ||| ||||| ||||| ||||    
T  36118166 tatttagttcaaaaatatattaattgacatttccattttagttaagaaattgagagaatct 36118226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 70; Significance: 5e-31; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 512 - 637
Target Start/End: Original strand, 36494897 - 36495021
Alignment:
Q  512 aagttttggtttataaatatgcaattaatgtcttcaattctttgaaatgtgtgcatttatatcatatatttacttcaaaactatagtaattgacatttcc 611  Q
    |||||||||| ||||||| | |||||||||||| ||||| ||  ||||||||||||||||||||| ||||||||| ||||| |||||||| |||| ||||    
T  36494897 aagttttggtgtataaatgttcaattaatgtctccaatt-ttaaaaatgtgtgcatttatatcatttatttactttaaaaccatagtaatggacacttcc 36494995  T
Q  612 attttatttaggaaatggagaggatc 637  Q
    |||||||||||||||||||| |||||    
T  36494996 attttatttaggaaatggagcggatc 36495021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 521 - 641
Target Start/End: Original strand, 36881088 - 36881207
Alignment:
Q  521 tttataaatatgcaattaatgtcttcaattctttgaaatgtgtgcatttatatcatatatttacttcaaaactatagtaattgacatttccattttattt 620  Q
    ||||||||| | ||||||||||||| |||||    || ||||||| |||||||||| |||||||||||||||||||||||  ||||||||||||||||||    
T  36881088 tttataaatgttcaattaatgtcttaaattccaa-aagtgtgtgcgtttatatcatttatttacttcaaaactatagtaagggacatttccattttattt 36881186  T
Q  621 aggaaatggagaggatcttca 641  Q
    | |||||||||||||||||||    
T  36881187 aagaaatggagaggatcttca 36881207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 556 - 632
Target Start/End: Complemental strand, 3177620 - 3177544
Alignment:
Q  556 aaatgtgtgcatttatatcatatatttacttcaaaactatagtaattgacatttccattttatttaggaaatggaga 632  Q
    ||||| ||||||||||||||| ||||||||| ||||| |||||||| |||||||| |||||||||||||||||||||    
T  3177620 aaatgagtgcatttatatcatttatttactttaaaacgatagtaatggacatttcgattttatttaggaaatggaga 3177544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 560 - 636
Target Start/End: Complemental strand, 18475601 - 18475527
Alignment:
Q  560 gtgtgcatttatatcatatatttacttcaaaactatagtaattgacatttccattttatttaggaaatggagaggat 636  Q
    ||||||| ||||||||| |||||| ||||||||||||||| |  |||||| |||||||  ||| |||||||||||||    
T  18475601 gtgtgcagttatatcatttatttaattcaaaactatagtactgcacattttcatttta--tagaaaatggagaggat 18475527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 1e-19; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 523 - 637
Target Start/End: Complemental strand, 3971657 - 3971544
Alignment:
Q  523 tataaatatgcaattaatgtcttcaattctttgaaatgtgtgcatttatatcatatatttacttcaaaactatagtaattgacatttccattttatttag 622  Q
    ||||||| | |||||||||||| ||||| || ||||||| | ||||||||| || |||||| |  |||| ||||||||||||||||||||||||||||||    
T  3971657 tataaatgttcaattaatgtctccaatt-ttagaaatgtttacatttatattatttatttagtaaaaaaatatagtaattgacatttccattttatttag 3971559  T
Q  623 gaaatggagaggatc 637  Q
     |||| |||||||||    
T  3971558 aaaattgagaggatc 3971544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 555 - 637
Target Start/End: Original strand, 43701453 - 43701535
Alignment:
Q  555 gaaatgtgtgcatttatatcatatatttacttcaaaactatagtaattgacatttccattttatttaggaaatggagaggatc 637  Q
    ||||||||| ||||||||| || ||| |||||||| ||||| ||||| |||||||| |||||||||| |||||||||||||||    
T  43701453 gaaatgtgtccatttatataatttatatacttcaagactatcgtaatggacatttctattttatttacgaaatggagaggatc 43701535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 552 - 599
Target Start/End: Complemental strand, 30044688 - 30044641
Alignment:
Q  552 tttgaaatgtgtgcatttatatcatatatttacttcaaaactatagta 599  Q
    ||||||| ||||||||||||||||| ||||||||| ||||||||||||    
T  30044688 tttgaaacgtgtgcatttatatcatttatttactttaaaactatagta 30044641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 561 - 608
Target Start/End: Original strand, 29991654 - 29991701
Alignment:
Q  561 tgtgcatttatatcatatatttacttcaaaactatagtaattgacatt 608  Q
    ||||||||||||| || ||||| |||||||||||||||||| ||||||    
T  29991654 tgtgcatttatattatgtattttcttcaaaactatagtaatagacatt 29991701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 563 - 601
Target Start/End: Complemental strand, 43119291 - 43119253
Alignment:
Q  563 tgcatttatatcatatatttacttcaaaactatagtaat 601  Q
    |||||||||||||| |||||||| |||||||||||||||    
T  43119291 tgcatttatatcatgtatttactacaaaactatagtaat 43119253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 556 - 638
Target Start/End: Original strand, 49013039 - 49013121
Alignment:
Q  556 aaatgtgtgcatttatatcatatatttacttcaaaactatagtaattgacatttccattttatttaggaaatggagaggatct 638  Q
    ||||||||| ||||||||||| |||||||| || |||||||||||  ||||||   ||||  | ||||||||||||| |||||    
T  49013039 aaatgtgtgtatttatatcatgtatttactacataactatagtaacggacattgttatttattgtaggaaatggagaagatct 49013121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 1e-19; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 490 - 637
Target Start/End: Original strand, 14362162 - 14362310
Alignment:
Q  490 ctctcaatttgttcaattaccaaagttttggtttataaatatgcaattaatgtcttcaattctttgaaatgtgtgcatttatatcatatatttact--tc 587  Q
    ||||| |||||||| ||||||||||||||  | ||||||| | ||| |||||||| ||||| || ||||| | | |||||||||||| | |||  |  ||    
T  14362162 ctctccatttgttccattaccaaagttttcatgtataaatgttcaactaatgtctccaatt-ttagaaatatattcatttatatcattttttttttgttc 14362260  T
Q  588 aaaactatagtaattgacatttccattttatttaggaaatggagaggatc 637  Q
    ||| ||||||||||||||||||  ||||||||||||||||||||||||||    
T  14362261 aaagctatagtaattgacatttagattttatttaggaaatggagaggatc 14362310  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 556 - 636
Target Start/End: Complemental strand, 35909806 - 35909727
Alignment:
Q  556 aaatgtgtgcatttatatcatatatttacttcaaaactatagtaattgacatttccattttatttaggaaatggagaggat 636  Q
    ||||||||||||||||||||| |||||| || |||||| ||||||| || ||| |||||| ||||||||| ||||||||||    
T  35909806 aaatgtgtgcatttatatcatttatttatttgaaaact-tagtaatggaaattgccatttcatttaggaagtggagaggat 35909727  T

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Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 496 - 629
Target Start/End: Original strand, 41806524 - 41806653
Alignment:
Q  496 atttgttcaattaccaaagttttggtttataaatatgcaattaatgtcttcaattctttgaaatgtgtgcatttatatcatatatttacttcaaaactat 595  Q
    |||||||| ||||| ||| ||||||| ||||||| |   |||||| ||||||||| ||  ||||||||||||||   | || ||||||||||||||  ||    
T  41806524 atttgttccattacaaaacttttggtgtataaatgtttgattaatatcttcaatt-ttaaaaatgtgtgcattt---taatttatttacttcaaaatcat 41806619  T
Q  596 agtaattgacatttccattttatttaggaaatgg 629  Q
    ||||||  ||| ||||||||||||||||||||||    
T  41806620 agtaatgaacacttccattttatttaggaaatgg 41806653  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 513 - 615
Target Start/End: Original strand, 12802139 - 12802240
Alignment:
Q  513 agttttggtttataaatatgcaattaatgtcttcaattctttgaaatgtgtgcatttatatcatatatttacttcaaaactatagtaattgacatttcca 612  Q
    ||||||||| ||||||| |  |||||||||||  |||| || ||||| |||||||||||||  | |||||| |||||||||||| |||| || || ||||    
T  12802139 agttttggtgtataaatgtctaattaatgtctcaaatt-ttagaaatatgtgcatttatattttttatttaattcaaaactatattaatggaaatgtcca 12802237  T
Q  613 ttt 615  Q
    |||    
T  12802238 ttt 12802240  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 513 - 639
Target Start/End: Complemental strand, 26674229 - 26674104
Alignment:
Q  513 agttttggtttataaatatgcaattaatgtcttcaattctttgaaatgtgtgcatttatatcatatatttacttcaaaactatagtaattgacatttcca 612  Q
    ||||||||| ||||||| |   ||||||||| |||||| || ||||| |||| ||||||||||| |||||||| |||||| |||||||| |||| |  ||    
T  26674229 agttttggtgtataaatctatgattaatgtcatcaatt-ttagaaatatgtgtatttatatcatgtatttactccaaaacgatagtaatggacactatca 26674131  T
Q  613 ttttatttaggaaatggagaggatctt 639  Q
    |||  |||||||||||||||| |||||    
T  26674130 tttattttaggaaatggagagaatctt 26674104  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 555 - 638
Target Start/End: Original strand, 3960848 - 3960931
Alignment:
Q  555 gaaatgtgtgcatttatatcatatatttacttcaaaactatagtaattgacatttccattttatttaggaaatggagaggatct 638  Q
    |||||||||||||||||||||| |||||||  ||||||||||||||| ||||||  |||||    ||| |||||||||||||||    
T  3960848 gaaatgtgtgcatttatatcatgtatttaccacaaaactatagtaatggacattatcatttatcgtagaaaatggagaggatct 3960931  T

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Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 556 - 638
Target Start/End: Original strand, 14952465 - 14952547
Alignment:
Q  556 aaatgtgtgcatttatatcatatatttacttcaaaactatagtaattgacatttccattttatttaggaaatggagaggatct 638  Q
    |||||| | |||||||||||| ||||||||| |||||| ||||||| || | | ||||||| |||||||||| ||||||||||    
T  14952465 aaatgtatacatttatatcatttatttacttgaaaactctagtaatagagactgccattttttttaggaaattgagaggatct 14952547  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 556 - 638
Target Start/End: Complemental strand, 22311755 - 22311673
Alignment:
Q  556 aaatgtgtgcatttatatcatatatttacttcaaaactatagtaattgacatttccattttatttaggaaatggagaggatct 638  Q
    |||| |||||||||||||||| |||||||   |||||||||||||| |||||| | ||||  | ||| ||||| |||||||||    
T  22311755 aaatatgtgcatttatatcatttatttacacgaaaactatagtaatggacattgcaatttattgtagcaaatgaagaggatct 22311673  T

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Target: chr6 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 505 - 626
Target Start/End: Original strand, 10367664 - 10367784
Alignment:
Q  505 attaccaaagttttggtttataaatatgcaattaatgtcttcaattctttgaaatgtgtgcatttatatcatatatttacttcaaaactatagtaattga 604  Q
    ||||||||||||||||| ||||| ||| |||||||| |||||||||| |  |||| |||  |||||| |||||||||||| |||||| |||| |||  ||    
T  10367664 attaccaaagttttggtgtataattattcaattaatatcttcaattc-taaaaatatgtttatttatttcatatatttacctcaaaattataataacgga 10367762  T
Q  605 catttccattttatttaggaaa 626  Q
     ||||||| |||||||| ||||    
T  10367763 tatttccaatttatttaagaaa 10367784  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 555 - 601
Target Start/End: Complemental strand, 21917435 - 21917389
Alignment:
Q  555 gaaatgtgtgcatttatatcatatatttacttcaaaactatagtaat 601  Q
    ||||| |||| ||||||||||| |||||||| |||||||||||||||    
T  21917435 gaaatatgtgtatttatatcatgtatttactacaaaactatagtaat 21917389  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 570 - 638
Target Start/End: Complemental strand, 3760658 - 3760590
Alignment:
Q  570 atatcatatatttacttcaaaactatagtaattgacatttccattttatttaggaaatggagaggatct 638  Q
    ||||||| |||||| ||||||||||||||||| |||||| | ||||| |||||||||| ||||||||||    
T  3760658 atatcatttatttatttcaaaactatagtaatggacattcctattttttttaggaaattgagaggatct 3760590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 490 - 599
Target Start/End: Complemental strand, 18555436 - 18555328
Alignment:
Q  490 ctctcaatttgttcaattaccaaagttttggtttataaatatgcaattaatgtcttcaattctttgaaatgtgtgcatttatatcatatatttacttcaa 589  Q
    ||||| |||||||| |||||| ||| |||  | ||||||| | |||||||||| ||||| | |   ||||||||||||||||||||| ||||||||||||    
T  18555436 ctctccatttgttccattaccgaagatttattgtataaatgttcaattaatgt-ttcaaatttaaaaaatgtgtgcatttatatcatttatttacttcaa 18555338  T
Q  590 aactatagta 599  Q
    ||||| ||||    
T  18555337 aactaaagta 18555328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 578 - 637
Target Start/End: Complemental strand, 31678694 - 31678635
Alignment:
Q  578 tatttacttcaaaactatagtaattgacatttccattttatttaggaaatggagaggatc 637  Q
    |||||||||||||||||||||||| || || |||||||  |||| |||||||||||||||    
T  31678694 tatttacttcaaaactatagtaatggagatgtccatttattttaagaaatggagaggatc 31678635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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