View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1859R-Insertion-5 (Length: 528)
Name: NF1859R-Insertion-5
Description: NF1859R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1859R-Insertion-5 |
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Alignment Details
Target: chr3 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 8 - 504
Target Start/End: Complemental strand, 34280553 - 34280056
Alignment:
| Q |
8 |
acactttgtccgtgtaatttaagattcttaatggaccaaatatatattattcatttcttagggaccaagtatgtctccatgtattttatcagaaatcaag |
107 |
Q |
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| T |
34280553 |
acactttgtccctgtaatttaagattcttaatg-accaaatatatattattcatttcttagggaccaagtatgtctccatgtattttatcagaaatcaag |
34280455 |
T |
|
| Q |
108 |
ttgagnnnnnnnnnnct--ccttctgtcggaggtaatcccgtcggacactatatgtggatatctctcccatccaggattcagacattgtttcgccacatt |
205 |
Q |
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| T |
34280454 |
tagagttttttttttttttccttctgtcggaggtaatcccgtcggacactatatgtggatatctctcccatccaggatacagacattgtttcgccacatt |
34280355 |
T |
|
| Q |
206 |
gtcggagtctaacccaataatttnnnnnnnnnnnnnnnnnnnnnntcaatggtacctcgatggtaaataacacagagagacgtttcttcccctttgcaac |
305 |
Q |
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| T |
34280354 |
gtcggagtctaacccaataatttaaaagaaaaattaaataaaaaatcaatggtacctcgatggtaaataacacagagagacgtttcttcccctttgcaac |
34280255 |
T |
|
| Q |
306 |
aagttgataccctaattaacaaaagataaaaacgaattaaggaaaatttgatagaaaaaatggattaattaggggttttggagaatggaagtactgactt |
405 |
Q |
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| T |
34280254 |
aagttgataccctaattaacaaaagataaaaacgaattaaggaaaatttgatagaaaaaatggattaattaggggttttggagaatggaagaactgactt |
34280155 |
T |
|
| Q |
406 |
gaatcaacgaccatacggtaggaataatcagaaccgtcggttcctgaaggtcttcccaacggtgattttctttgttgcattgctcttcttcttctttga |
504 |
Q |
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| T |
34280154 |
gaatcaacgaccatacggtaggaataatcagaaccgtcggtccctgaaggtcttcccaacggtgattttctttgttgcattgttcttcttcttctttga |
34280056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 130; Significance: 4e-67; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 251 - 486
Target Start/End: Original strand, 12725191 - 12725433
Alignment:
| Q |
251 |
tcaatggtacctcgatggtaaataacacagagagacgtttcttcccctttgcaacaagttgataccctaattaacaaaagataaaaacgaattaaggaaa |
350 |
Q |
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||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| | |
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| T |
12725191 |
tcaatggtacctcaatgataaataagacagagagacgtttcttcccctttgcaacaagttgataccctaattaacaaaaaatcaaaacgaattaaggtta |
12725290 |
T |
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| Q |
351 |
atttgata-------gaaaaaatgg-attaattaggggttttggagaatggaagtactgacttgaatcaacgaccatacggtaggaataatcagaaccgt |
442 |
Q |
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| T |
12725291 |
atttaatataaaatagaaaaaaggggaatgattagggatttag-agaatggaaatactgacttgaatcaacaaccatacggtaggaataatcagaaccat |
12725389 |
T |
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| Q |
443 |
cggttcctgaaggtcttcccaacggtgattttctttgttgcatt |
486 |
Q |
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| T |
12725390 |
cggttcctgaaggtcttcccaacgctgattttctttgctgcatt |
12725433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 398 - 486
Target Start/End: Original strand, 30027336 - 30027424
Alignment:
| Q |
398 |
actgacttgaatcaacgaccatacggtaggaataatcagaaccgtcggttcctgaaggtcttcccaacggtgattttctttgttgcatt |
486 |
Q |
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| T |
30027336 |
actgacttgaatcaactaccatacggtaggaataatcagaagcatcggttccagatggtcttcccaatgttgattttctttgctgcatt |
30027424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 287 - 329
Target Start/End: Original strand, 30027214 - 30027256
Alignment:
| Q |
287 |
gtttcttcccctttgcaacaagttgataccctaattaacaaaa |
329 |
Q |
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| T |
30027214 |
gtttctttccctttgcaacaagttgataacctaattaacaaaa |
30027256 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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