View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1859R-Insertion-6 (Length: 304)

Name: NF1859R-Insertion-6
Description: NF1859R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1859R-Insertion-6
NF1859R-Insertion-6
[»] chr7 (13 HSPs)
chr7 (9-304)||(20292371-20292666)
chr7 (9-304)||(20170082-20170371)
chr7 (9-304)||(20172075-20172364)
chr7 (9-304)||(20261995-20262290)
chr7 (24-304)||(20271564-20271844)
chr7 (9-304)||(20064538-20064833)
chr7 (9-304)||(20092104-20092399)
chr7 (9-304)||(20301573-20301868)
chr7 (53-304)||(20296797-20297048)
chr7 (51-304)||(20281878-20282131)
chr7 (36-304)||(20241362-20241630)
chr7 (9-304)||(20229412-20229707)
chr7 (161-304)||(20287000-20287143)
[»] chr4 (2 HSPs)
chr4 (9-304)||(40821176-40821472)
chr4 (45-304)||(40825879-40826141)
[»] scaffold0027 (1 HSPs)
scaffold0027 (31-297)||(135149-135418)


Alignment Details
Target: chr7 (Bit Score: 288; Significance: 1e-161; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 9 - 304
Target Start/End: Complemental strand, 20292666 - 20292371
Alignment:
Q  9 ctttggttgattgatagtttcatgctaggaagtaacgtatctgaaggttgctgaatactctgccataaaatgtttccagttgtgctctccaaaaggacaa 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  20292666 ctttggttgattgatagtttcatgctaggaagtaacgtatctgaaggttgctgaatactctgccataaaatggttccagttgtgctctccaaaaggacaa 20292567  T
Q  109 ggttaccaaagtcggaaaactgagaacttgtattggtttctatgttggagacatttgatgtccaaatgacttgcttctgtccgtttaataccacaagatt 208  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20292566 ggttaccaaagtcggaaaactgagaacttgtattggttgctatgttggagacatttgatgtccaaatgacttgcttctgtccgtttaataccacaagatt 20292467  T
Q  209 tccatcttcagatattgccgcagtcccattagaatcattcagtggttggtttctgttcgccacccatatgattgtagactgagacttccaccaaat 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20292466 tccatcttcagatattgccgcagtcccattagaatcattcagtggttggtttctgttcgccacccatatgattgtagactgagacttccaccaaat 20292371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 9 - 304
Target Start/End: Original strand, 20170082 - 20170371
Alignment:
Q  9 ctttggttgattgatagtttcatgctaggaagtaacgtatctgaaggttgctgaatactctgccataaaatgtttccagttgtgctctccaaaaggacaa 108  Q
    |||| ||||||||| || ||||| ||||| ||||| ||||||| ||||||||||||||| |||||||||||||||||||||||       ||||||||||    
T  20170082 cttttgttgattgaaagcttcatactaggcagtaatgtatctgtaggttgctgaatactttgccataaaatgtttccagttgt-------aaaaggacaa 20170174  T
Q  109 ggttaccaaagtcggaaaa-ctgagaacttgtattggtttctatgttggagacatttgatgtccaaatgacttgcttctgtccgtttaataccacaagat 207  Q
    ||||||||||||| ||||| ||||||||||||||| ||| |||||||||| ||| |||||| |||||||||| | |||||||| || |||||||||||||    
T  20170175 ggttaccaaagtctgaaaagctgagaacttgtatttgttgctatgttggaaacacttgatgaccaaatgactcgtttctgtccattcaataccacaagat 20170274  T
Q  208 ttccatcttcagatattgccgcagtcccattagaatcattcagtggttggtttctgttcgccacccatatgattgtagactgagacttccaccaaat 304  Q
    ||||||||||| ||||||   || |||||||||||||||||||||||| ||||||||| |||||||||||||||||||| |||||||||||||||||    
T  20170275 ttccatcttcaaatattgtgacaatcccattagaatcattcagtggttagtttctgttagccacccatatgattgtagattgagacttccaccaaat 20170371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 9 - 304
Target Start/End: Original strand, 20172075 - 20172364
Alignment:
Q  9 ctttggttgattgatagtttcatgctaggaagtaacgtatctgaaggttgctgaatactctgccataaaatgtttccagttgtgctctccaaaaggacaa 108  Q
    |||| ||||||||| || ||||| ||||| ||||| ||||||| ||||||||||||||| |||||||||||||||||||||||       ||||||||||    
T  20172075 cttttgttgattgaaagcttcatactaggcagtaatgtatctgtaggttgctgaatactttgccataaaatgtttccagttgt-------aaaaggacaa 20172167  T
Q  109 ggttaccaaagtcggaaaa-ctgagaacttgtattggtttctatgttggagacatttgatgtccaaatgacttgcttctgtccgtttaataccacaagat 207  Q
    ||||||||||||| ||||| ||||||||||||||| ||| |||||||||| ||| |||||| |||||||||| | |||||||| || |||||||||||||    
T  20172168 ggttaccaaagtctgaaaagctgagaacttgtatttgttgctatgttggaaacacttgatgaccaaatgactcgtttctgtccattcaataccacaagat 20172267  T
Q  208 ttccatcttcagatattgccgcagtcccattagaatcattcagtggttggtttctgttcgccacccatatgattgtagactgagacttccaccaaat 304  Q
    ||||||||||| ||||||   || |||||||||||||||||||||||| ||||||||| |||||||||||||||||||| |||||||||||||||||    
T  20172268 ttccatcttcaaatattgtgacaatcccattagaatcattcagtggttagtttctgttagccacccatatgattgtagattgagacttccaccaaat 20172364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 9 - 304
Target Start/End: Complemental strand, 20262290 - 20261995
Alignment:
Q  9 ctttggttgattgatagtttcatgctaggaagtaacgtatctgaaggttgctgaatactctgccataaaatgtttccagttgtgctctccaaaaggacaa 108  Q
    |||| ||||||||| | ||||||| | ||||| || ||||||||||| ||||||||||||||||||||||||||||| |||||| |||||| ||| ||||    
T  20262290 cttttgttgattgaaactttcatgtttggaaggaatgtatctgaaggctgctgaatactctgccataaaatgtttccggttgtgttctccagaagcacaa 20262191  T
Q  109 ggttaccaaagtcggaaaactgagaacttgtattggtttctatgttggagacatttgatgtccaaatgacttgcttctgtccgtttaataccacaagatt 208  Q
    ||||||| ||  | ||||| |||||||||||||| |||  ||||||||| |||||||||| |||||  ||||| |||||||| |||||||||||||||||    
T  20262190 ggttaccgaaacccgaaaagtgagaacttgtatttgttgttatgttggaaacatttgatgaccaaacaacttgtttctgtccatttaataccacaagatt 20262091  T
Q  209 tccatcttcagatattgccgcagtcccattagaatcattcagtggttggtttctgttcgccacccatatgattgtagactgagacttccaccaaat 304  Q
    ||||| |||||||||||   || |||||||||||||||||||| ||| ||||||||| || ||||||||||||||||| |||||||||||||||||    
T  20262090 tccatgttcagatattgtgacaatcccattagaatcattcagtagtttgtttctgtttgcaacccatatgattgtagattgagacttccaccaaat 20261995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 24 - 304
Target Start/End: Complemental strand, 20271844 - 20271564
Alignment:
Q  24 agtttcatgctaggaagtaacgtatctgaaggttgctgaatactctgccataaaatgtttccagttgtgctctccaaaaggacaaggttaccaaagtcgg 123  Q
    |||||||| | ||| ||||| ||||||| ||||||||||||||||||||||||  ||||||| |||||||||||||||||||||||||| ||| |||| |    
T  20271844 agtttcataccaggcagtaatgtatctgtaggttgctgaatactctgccataaggtgtttccggttgtgctctccaaaaggacaaggttgccatagtctg 20271745  T
Q  124 aaaactgagaacttgtattggtttctatgttggagacatttgatgtccaaatgacttgcttctgtccgtttaataccacaagatttccatcttcagatat 223  Q
    ||||||| ||| | ||||||| | |||||||||| |||||||||| ||||  |||| | |||||||| || |||||||||||||||||||||||||||||    
T  20271744 aaaactgcgaagtggtattggatgctatgttggaaacatttgatgaccaatagactcgtttctgtccattcaataccacaagatttccatcttcagatat 20271645  T
Q  224 tgccgcagtcccattagaatcattcagtggttggtttctgttcgccacccatatgattgtagactgagacttccaccaaat 304  Q
    ||   || ||||||||| |||||||| ||||||||||||||| |||||||||||||| ||||| |||||||||||||||||    
T  20271644 tgtgacaatcccattagtatcattcaatggttggtttctgtttgccacccatatgatagtagattgagacttccaccaaat 20271564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 9 - 304
Target Start/End: Original strand, 20064538 - 20064833
Alignment:
Q  9 ctttggttgattgatagtttcatgctaggaagtaacgtatctgaaggttgctgaatactctgccataaaatgtttccagttgtgctctccaaaaggacaa 108  Q
    |||| |||||| || |||||||| | ||| ||||| | ||| ||||||| |||||||||||||||||| |||||||| |||||||| |||||||||||||    
T  20064538 cttttgttgatagaaagtttcataccaggcagtaatgaatcagaaggttcctgaatactctgccataagatgtttcctgttgtgctatccaaaaggacaa 20064637  T
Q  109 ggttaccaaagtcggaaaactgagaacttgtattggtttctatgttggagacatttgatgtccaaatgacttgcttctgtccgtttaataccacaagatt 208  Q
    |||| |||  ||| |||||||| ||| | ||||||| |||||||||||| |||||||||| |||||||||||| |||||||| |||||||||||||||||    
T  20064638 ggtttccatggtccgaaaactgggaagtggtattggattctatgttggaaacatttgatgaccaaatgacttgtttctgtccatttaataccacaagatt 20064737  T
Q  209 tccatcttcagatattgccgcagtcccattagaatcattcagtggttggtttctgttcgccacccatatgattgtagactgagacttccaccaaat 304  Q
    ||||||||||||||| |    |||||||||||||||||| | ||||||||||||||| ||||||||||||| ||||||  |||| |||||||||||    
T  20064738 tccatcttcagatatggtgatagtcccattagaatcatttattggttggtttctgtttgccacccatatgactgtagaacgagaattccaccaaat 20064833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 9 - 304
Target Start/End: Original strand, 20092104 - 20092399
Alignment:
Q  9 ctttggttgattgatagtttcatgctaggaagtaacgtatctgaaggttgctgaatactctgccataaaatgtttccagttgtgctctccaaaaggacaa 108  Q
    |||| ||||||||| ||||||||||  ||||| || ||||||||||| |||||||||||||||||||   ||||||||||||||||||||  ||| ||||    
T  20092104 cttttgttgattgaaagtttcatgcctggaaggaatgtatctgaaggctgctgaatactctgccatatgttgtttccagttgtgctctcctgaagcacaa 20092203  T
Q  109 ggttaccaaagtcggaaaactgagaacttgtattggtttctatgttggagacatttgatgtccaaatgacttgcttctgtccgtttaataccacaagatt 208  Q
    ||||||||||||| ||||   | ||| | ||||||| | |||||||||| |||||||||| |||||||||||| |||| ||| |||||||||||||||||    
T  20092204 ggttaccaaagtcagaaattcgggaagtggtattggatgctatgttggaaacatttgatgaccaaatgacttgtttctttccatttaataccacaagatt 20092303  T
Q  209 tccatcttcagatattgccgcagtcccattagaatcattcagtggttggtttctgttcgccacccatatgattgtagactgagacttccaccaaat 304  Q
    |||||||||| |||||    || |||||||||||||||||||||||||||||||||| ||||||||||||| | |||| |||||||||||||||||    
T  20092304 tccatcttcaaatattatgacaatcccattagaatcattcagtggttggtttctgtttgccacccatatgaatctagattgagacttccaccaaat 20092399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 9 - 304
Target Start/End: Complemental strand, 20301868 - 20301573
Alignment:
Q  9 ctttggttgattgatagtttcatgctaggaagtaacgtatctgaaggttgctgaatactctgccataaaatgtttccagttgtgctctccaaaaggacaa 108  Q
    |||| |||||| || |||||||| | ||  ||||| ||||||| |||||| ||||||||||||||||| | ||||||||||| | |||||||||||||||    
T  20301868 cttttgttgatagaaagtttcataccagacagtaatgtatctgtaggttgttgaatactctgccataatacgtttccagttgcgttctccaaaaggacaa 20301769  T
Q  109 ggttaccaaagtcggaaaactgagaacttgtattggtttctatgttggagacatttgatgtccaaatgacttgcttctgtccgtttaataccacaagatt 208  Q
    |||| ||| |||| |||||||||||||||||||| ||| |||||||||| |||||||||| |||||||||| | |||||||| ||||||||| ||| |||    
T  20301768 ggttgccatagtctgaaaactgagaacttgtatttgttgctatgttggaaacatttgatgaccaaatgactcgtttctgtccatttaatacctcaatatt 20301669  T
Q  209 tccatcttcagatattgccgcagtcccattagaatcattcagtggttggtttctgttcgccacccatatgattgtagactgagacttccaccaaat 304  Q
    ||||||||| |||||||   || |||||||||||||||||||||||||||||||||| |||||||||| || ||||||  |||| |||||||||||    
T  20301668 tccatcttcggatattgtgacaatcccattagaatcattcagtggttggtttctgttagccacccatacgactgtagaacgagaattccaccaaat 20301573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 53 - 304
Target Start/End: Complemental strand, 20297048 - 20296797
Alignment:
Q  53 aggttgctgaatactctgccataaaatgtttccagttgtgctctccaaaaggacaaggttaccaaagtcggaaaactgagaacttgtattggtttctatg 152  Q
    ||||||||||||||||| |||||| || |||| |||||||||||||||||||||||||||||||||||| ||||| ||| |||||||| | ||| |||||    
T  20297048 aggttgctgaatactctcccataacatatttctagttgtgctctccaaaaggacaaggttaccaaagtctgaaaattgaaaacttgtaattgttgctatg 20296949  T
Q  153 ttggagacatttgatgtccaaatgacttgcttctgtccgtttaataccacaagatttccatcttcagatattgccgcagtcccattagaatcattcagtg 252  Q
    ||||| |||||||||| |||||||||||| |||| ||| ||||||||||||||||||||||||||||||||||   || |||||||||||||||||||||    
T  20296948 ttggaaacatttgatgaccaaatgacttgtttctatccatttaataccacaagatttccatcttcagatattgtgacaatcccattagaatcattcagtg 20296849  T
Q  253 gttggtttctgttcgccacccatatgattgtagactgagacttccaccaaat 304  Q
     ||||||| |||| |||||||||| || |||||   ||||||||||||||||    
T  20296848 attggtttttgttagccacccatacgactgtagtgcgagacttccaccaaat 20296797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 51 - 304
Target Start/End: Complemental strand, 20282131 - 20281878
Alignment:
Q  51 gaaggttgctgaatactctgccataaaatgtttccagttgtgctctccaaaaggacaaggttaccaaagtcggaaaactgagaacttgtattggtttcta 150  Q
    ||||||||||||||| | |||||||||||||||||||||||  | |||||||||||||||||||||||||| |||||||||||||||||||| ||| |||    
T  20282131 gaaggttgctgaataatttgccataaaatgtttccagttgtaatatccaaaaggacaaggttaccaaagtctgaaaactgagaacttgtatttgttgcta 20282032  T
Q  151 tgttggagacatttgatgtccaaatgacttgcttctgtccgtttaataccacaagatttccatcttcagatattgccgcagtcccattagaatcattcag 250  Q
    ||||||| ||||| |||| ||| |||||| | |||||||| ||||||| | |||||||||||||||| |||||||    | |||||||||||||||||||    
T  20282031 tgttggaaacattcgatgaccatatgactcgtttctgtccatttaatatcgcaagatttccatcttcggatattgtgaaattcccattagaatcattcag 20281932  T
Q  251 tggttggtttctgttcgccacccatatgattgtagactgagacttccaccaaat 304  Q
    ||| |||||||||||  ||||||| ||||||||||| |||||||||||||||||    
T  20281931 tggctggtttctgttttccacccacatgattgtagattgagacttccaccaaat 20281878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 36 - 304
Target Start/End: Complemental strand, 20241630 - 20241362
Alignment:
Q  36 ggaagtaacgtatctgaaggttgctgaatactctgccataaaatgtttccagttgtgctctccaaaaggacaaggttaccaaagtcggaaaactgagaac 135  Q
    ||||| || ||||||||||| ||| ||||||||||||||||  | ||||| |||||| |||||| ||| ||||||||||| ||  | |||||   |||||    
T  20241630 ggaaggaatgtatctgaaggctgcagaatactctgccataagttttttccggttgtgttctccagaagcacaaggttaccgaaacccgaaaagcaagaac 20241531  T
Q  136 ttgtattggtttctatgttggagacatttgatgtccaaatgacttgcttctgtccgtttaataccacaagatttccatcttcagatattgccgcagtccc 235  Q
    ||||||| ||| |||||||||| |||||||||| |||||||||| | |||||||| |||||||||||||||||||||||||||||||| |   || ||||    
T  20241530 ttgtatttgttgctatgttggaaacatttgatgaccaaatgactcgtttctgtccatttaataccacaagatttccatcttcagatatcgtgacaatccc 20241431  T
Q  236 attagaatcattcagtggttggtttctgttcgccacccatatgattgtagactgagacttccaccaaat 304  Q
    |||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||    
T  20241430 attagagtcattcagtggttggtttctgtttgccacccatatgattgtagattgagacttccaccaaat 20241362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 9 - 304
Target Start/End: Complemental strand, 20229707 - 20229412
Alignment:
Q  9 ctttggttgattgatagtttcatgctaggaagtaacgtatctgaaggttgctgaatactctgccataaaatgtttccagttgtgctctccaaaaggacaa 108  Q
    |||| ||||| ||| ||||||||||  ||||| || ||||||||||| ||||||| ||||||||||||  ||||||||||||||||||||| ||| ||||    
T  20229707 cttttgttgactgaaagtttcatgcctggaaggaatgtatctgaaggctgctgaaaactctgccataagttgtttccagttgtgctctccagaagcacaa 20229608  T
Q  109 ggttaccaaagtcggaaaactgagaacttgtattggtttctatgttggagacatttgatgtccaaatgacttgcttctgtccgtttaataccacaagatt 208  Q
    |||||||| |||| || |  || ||  | ||||||| | |||||||||| ||||  |||| |||||||||||| |||||||| ||||||||||| |||||    
T  20229607 ggttaccagagtcagacatttgggaggtggtattggatactatgttggaaacatacgatgaccaaatgacttgtttctgtccatttaataccacgagatt 20229508  T
Q  209 tccatcttcagatattgccgcagtcccattagaatcattcagtggttggtttctgttcgccacccatatgattgtagactgagacttccaccaaat 304  Q
    ||||| |||||||||||   || |||||||||||||||||||||||| ||||||||| || ||||||||||||||||| |||||||||||||||||    
T  20229507 tccatgttcagatattgtgacaatcccattagaatcattcagtggtttgtttctgtttgcaacccatatgattgtagattgagacttccaccaaat 20229412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 161 - 304
Target Start/End: Complemental strand, 20287143 - 20287000
Alignment:
Q  161 atttgatgtccaaatgacttgcttctgtccgtttaataccacaagatttccatcttcagatattgccgcagtcccattagaatcattcagtggttggttt 260  Q
    |||||||| |||||| ||||| || ||||| || |||||||||||||||||||| ||||||||||   || |||||||||||||| | ||||||| ||||    
T  20287143 atttgatgaccaaattacttgtttttgtccattcaataccacaagatttccatcctcagatattgtgacaatcccattagaatcacttagtggtttgttt 20287044  T
Q  261 ctgttcgccacccatatgattgtagactgagacttccaccaaat 304  Q
    ||||| |||||||||||||||| ||| |||||||||||||||||    
T  20287043 ctgtttgccacccatatgattgaagattgagacttccaccaaat 20287000  T

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Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 9 - 304
Target Start/End: Original strand, 40821176 - 40821472
Alignment:
Q  9 ctttggttgattgatagtttcatgctaggaagtaacgtatctgaaggttgctgaatactctgccataaaatgtttccagttgtgctctccaaaaggacaa 108  Q
    |||| ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||    
T  40821176 cttttgttgattgatattttcatgctaggtagtaacgtatctgaaggttgctgaatactctaccataaaatgtttccagttgtactctccaaaaggacaa 40821275  T
Q  109 ggttaccaaagtcggaaaactgagaacttgtattggtttctatgttggagacatttgatgtccaaatgacttgcttctgtccgtttaataccacaagatt 208  Q
    ||||||||||||  |||||||||||||||||||||| | |||||||||| ||||||||||||||||||||||| || ||||| || ||||||||||||||    
T  40821276 ggttaccaaagtttgaaaactgagaacttgtattggatgctatgttggaaacatttgatgtccaaatgacttgtttatgtccattcaataccacaagatt 40821375  T
Q  209 tccatcttcagatattgccgcagtcccattagaatcattcagtggttggtttctg-ttcgccacccatatgattgtagactgagacttccaccaaat 304  Q
    |||||||||||||||||   |||||||||||||||| |||||||||||||||||| || ||||||||||||||||||| ||||||||| ||||||||    
T  40821376 tccatcttcagatattgtgacagtcccattagaatcgttcagtggttggtttctgttttgccacccatatgattgtaggctgagacttgcaccaaat 40821472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 45 - 304
Target Start/End: Original strand, 40825879 - 40826141
Alignment:
Q  45 gtatctgaaggttgctgaatactctgccataaaatgtttccagttgtgctctccaaaaggacaaggttaccaaagtcggaaaactgaga---acttgtat 141  Q
    ||||| ||||||| ||||| ||||||||| || ||| |||| |||||||| ||||||||||||||||||||| | || |||||||| |    | | ||||    
T  40825879 gtatccgaaggtttctgaaaactctgccacaagatgcttcctgttgtgctttccaaaaggacaaggttaccataatctgaaaactgggcttcaatagtat 40825978  T
Q  142 tggtttctatgttggagacatttgatgtccaaatgacttgcttctgtccgtttaataccacaagatttccatcttcagatattgccgcagtcccattaga 241  Q
    | |    | |||| || | |||||||| |||||||||||| || ||||| || |||||| ||||||| ||||| |||||||| |    | ||||||||||    
T  40825979 ttgaggttgtgttagacaaatttgatgaccaaatgacttgtttttgtccattcaataccgcaagattgccatcctcagatatagtaataatcccattaga 40826078  T
Q  242 atcattcagtggttggtttctgttcgccacccatatgattgtagactgagacttccaccaaat 304  Q
    ||||||||||| | |||||||||| ||||||||||||||||||||||||||||||||||||||    
T  40826079 atcattcagtgatcggtttctgtttgccacccatatgattgtagactgagacttccaccaaat 40826141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 31 - 297
Target Start/End: Original strand, 135149 - 135418
Alignment:
Q  31 tgctaggaagtaacgtatctgaaggttgctgaatactctgccataaaatgtttccagttgtgctctccaaaaggacaaggtt---accaaagtcggaaaa 127  Q
    ||||||| ||||| |||||  ||||||| | ||||||||||||||| ||||||||| |||  || |||||||||| | ||||   | ||| ||| ||||     
T  135149 tgctaggcagtaatgtatccaaaggttgttcaatactctgccataatatgtttccaattggtctttccaaaaggaaatggttaacaacaaggtctgaaac 135248  T
Q  128 ctgagaacttgtattggtttctatgttggagacatttgatgtccaaatgacttgcttctgtccgtttaataccacaagatttccatcttcagatattgcc 227  Q
     | |||| |||||| || | ||||||| || | |||||||| || ||||  | ||||||||||  ||| ||||| || ||||||||||||| ||||||      
T  135249 gtaagaatttgtatcggatgctatgttcgaaatatttgatgacccaatgcttcgcttctgtccaattattaccataatatttccatcttcaaatattgtg 135348  T
Q  228 gcagtcccattagaatcattcagtggttggtttctgttcgccacccatatgattgtagactgagacttcc 297  Q
     || || |||| |||||||  | |||||| ||| ||||  |||| |||||||||||||| | ||||||||    
T  135349 acaatctcattcgaatcatcaaatggttgatttatgttttccactcatatgattgtagaataagacttcc 135418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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