View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1859_high_3 (Length: 362)
Name: NF1859_high_3
Description: NF1859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1859_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 8 - 278
Target Start/End: Original strand, 28463954 - 28464228
Alignment:
| Q |
8 |
cgaataatatggaaacatcctcatcaaaaaatgagtaactaaaaccctata--gtctttcttcaaccacgtgatacgaactcaatcgtctataccaagtg |
105 |
Q |
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| T |
28463954 |
cgaacaatatggaaacatcctcatcaaaaaatgagtaactaaaaccctataaagtctttcttcaaccacatgatacgaacccaatcgtctagaccaagtg |
28464053 |
T |
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| Q |
106 |
tatgcatggccttgcatcaagacatcagtaaggtcacagtgtggtgtggagagagcatcagttaatgtttaattaagaaatttattacatattataaaaa |
205 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| ||| |
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| T |
28464054 |
tatgcatggccttgcatcaagacatcagtaaggtcacagtgtggtgtggagagagaatcggttaatgtttaattaagaaatttattacatattatagaaa |
28464153 |
T |
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| Q |
206 |
gtactctttccgtcccaaattataagtnnnnnnnnttgtctc--aattataagtcgctttacaatatcaatgaag |
278 |
Q |
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|||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| |
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| T |
28464154 |
ctactctttccgtcccaaattataagtaaaaaaaattgtctcaaaattataagtcgctttacaatatcaatgaag |
28464228 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 277
Target Start/End: Original strand, 19713071 - 19713100
Alignment:
| Q |
248 |
aattataagtcgctttacaatatcaatgaa |
277 |
Q |
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| T |
19713071 |
aattataagtcgctttacaatatcaatgaa |
19713100 |
T |
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