View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1859_low_1 (Length: 567)
Name: NF1859_low_1
Description: NF1859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1859_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 425; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 1 - 565
Target Start/End: Complemental strand, 34280520 - 34279953
Alignment:
| Q |
1 |
accaaatatatattattcatttcttagggaccaagtatgtctccatgtattttatcagaaatcaagttgagnnnnnnnnnct---ccttctgtcggaggt |
97 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||| |
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| T |
34280520 |
accaaatatatattattcatttcttagggaccaagtatgtctccatgtattttatcagaaatcaagtagagttttttttttttttccttctgtcggaggt |
34280421 |
T |
|
| Q |
98 |
aatcccgtcggacactatatgtggatatctctcccatccaggattcagacattgtttcgccacattgtcggagtctaacccaataatttnnnnnnnnnnn |
197 |
Q |
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| T |
34280420 |
aatcccgtcggacactatatgtggatatctctcccatccaggatacagacattgtttcgccacattgtcggagtctaacccaataatttaaaagaaaaat |
34280321 |
T |
|
| Q |
198 |
nnnnnnnnnnntcaatggtacctcgatggtaaataacacagagagacgtttcttcccctttgcaacaagttgataccctaattaacaaaagataaaaacg |
297 |
Q |
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| T |
34280320 |
taaataaaaaatcaatggtacctcgatggtaaataacacagagagacgtttcttcccctttgcaacaagttgataccctaattaacaaaagataaaaacg |
34280221 |
T |
|
| Q |
298 |
aattaaggaaaatttgatagaaaaaatggattaattaggggttttggagaatggaagtactgacttgaatcaacgaccatacggtaggaataatcagaac |
397 |
Q |
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| T |
34280220 |
aattaaggaaaatttgatagaaaaaatggattaattaggggttttggagaatggaagaactgacttgaatcaacgaccatacggtaggaataatcagaac |
34280121 |
T |
|
| Q |
398 |
cgtcggttcctgaaggtcttcccaacggtgattttctttgttgcattgctcttcttcttctttgatttcacttttcagccaagaaactgaaaacttctaa |
497 |
Q |
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| T |
34280120 |
cgtcggtccctgaaggtcttcccaacggtgattttctttgttgcattgttcttcttcttctttgatttcacttttcagccaagaaactgaaaacttctaa |
34280021 |
T |
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| Q |
498 |
tgaaacggaagttccaacagaaaggggttgtgtgagtgtcttgtgcttttggcgtcaaatctctgctc |
565 |
Q |
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| T |
34280020 |
tgaaacggaagttccaacagaaaggggttgtgtgagtgtcttgtgcgtttggcgtcgaatctcggctc |
34279953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 130; Significance: 4e-67; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 209 - 474
Target Start/End: Original strand, 12725191 - 12725465
Alignment:
| Q |
209 |
tcaatggtacctcgatggtaaataacacagagagacgtttcttcccctttgcaacaagttgataccctaattaacaaaagataaaaacgaattaaggaaa |
308 |
Q |
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| T |
12725191 |
tcaatggtacctcaatgataaataagacagagagacgtttcttcccctttgcaacaagttgataccctaattaacaaaaaatcaaaacgaattaaggtta |
12725290 |
T |
|
| Q |
309 |
atttgata-------gaaaaaatgg-attaattaggggttttggagaatggaagtactgacttgaatcaacgaccatacggtaggaataatcagaaccgt |
400 |
Q |
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| T |
12725291 |
atttaatataaaatagaaaaaaggggaatgattagggatttag-agaatggaaatactgacttgaatcaacaaccatacggtaggaataatcagaaccat |
12725389 |
T |
|
| Q |
401 |
cggttcctgaaggtcttcccaacggtgattttctttgttgcattgct-cttcttctt-ctttgatttcacttttca |
474 |
Q |
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| T |
12725390 |
cggttcctgaaggtcttcccaacgctgattttctttgctgcattttttcttcttttttctttgttttcacttttca |
12725465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 2e-23; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 356 - 444
Target Start/End: Original strand, 30027336 - 30027424
Alignment:
| Q |
356 |
actgacttgaatcaacgaccatacggtaggaataatcagaaccgtcggttcctgaaggtcttcccaacggtgattttctttgttgcatt |
444 |
Q |
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| T |
30027336 |
actgacttgaatcaactaccatacggtaggaataatcagaagcatcggttccagatggtcttcccaatgttgattttctttgctgcatt |
30027424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 245 - 287
Target Start/End: Original strand, 30027214 - 30027256
Alignment:
| Q |
245 |
gtttcttcccctttgcaacaagttgataccctaattaacaaaa |
287 |
Q |
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| T |
30027214 |
gtttctttccctttgcaacaagttgataacctaattaacaaaa |
30027256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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