View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1859_low_11 (Length: 246)

Name: NF1859_low_11
Description: NF1859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1859_low_11
NF1859_low_11
[»] chr7 (2 HSPs)
chr7 (10-238)||(16067944-16068172)
chr7 (17-116)||(9692997-9693096)
[»] scaffold0408 (1 HSPs)
scaffold0408 (10-231)||(14984-15205)
[»] scaffold0010 (1 HSPs)
scaffold0010 (10-239)||(143102-143331)
[»] chr6 (6 HSPs)
chr6 (10-231)||(14746549-14746770)
chr6 (67-239)||(22395344-22395516)
chr6 (10-116)||(19545153-19545254)
chr6 (10-46)||(22395515-22395551)
chr6 (123-165)||(11796138-11796180)
chr6 (125-166)||(34487909-34487950)
[»] scaffold1043 (1 HSPs)
scaffold1043 (10-238)||(402-631)
[»] chr5 (6 HSPs)
chr5 (10-239)||(25791827-25792056)
chr5 (72-239)||(25756188-25756355)
chr5 (109-239)||(19020257-19020386)
chr5 (10-102)||(14137949-14138041)
chr5 (36-116)||(32948837-32948916)
chr5 (17-79)||(23909173-23909235)
[»] chr4 (11 HSPs)
chr4 (10-239)||(17419480-17419705)
chr4 (10-116)||(19727541-19727647)
chr4 (10-113)||(12230807-12230910)
chr4 (158-239)||(19727457-19727538)
chr4 (10-116)||(13268018-13268124)
chr4 (17-116)||(13559374-13559473)
chr4 (10-116)||(15870955-15871061)
chr4 (10-116)||(18554729-18554830)
chr4 (10-124)||(15888522-15888636)
chr4 (15-114)||(13235237-13235326)
chr4 (77-116)||(9886987-9887026)
[»] scaffold0061 (2 HSPs)
scaffold0061 (109-239)||(16550-16680)
scaffold0061 (109-239)||(25608-25738)
[»] chr2 (4 HSPs)
chr2 (10-116)||(29718105-29718211)
chr2 (48-116)||(18985282-18985350)
chr2 (29-116)||(26861220-26861307)
chr2 (160-239)||(22521725-22521805)
[»] scaffold0118 (1 HSPs)
scaffold0118 (10-115)||(11955-12060)
[»] chr3 (8 HSPs)
chr3 (10-115)||(21977104-21977209)
chr3 (10-115)||(21999535-21999640)
chr3 (12-115)||(22161732-22161835)
chr3 (10-116)||(19186781-19186887)
chr3 (17-116)||(10341062-10341161)
chr3 (36-116)||(10302744-10302824)
chr3 (10-116)||(16357828-16357933)
chr3 (15-124)||(16928556-16928663)
[»] chr8 (5 HSPs)
chr8 (10-115)||(10454081-10454186)
chr8 (13-70)||(17861384-17861441)
chr8 (10-62)||(1683229-1683281)
chr8 (10-116)||(15727753-15727862)
chr8 (11-58)||(1681192-1681239)
[»] scaffold0385 (1 HSPs)
scaffold0385 (10-116)||(16144-16250)
[»] scaffold0364 (1 HSPs)
scaffold0364 (36-116)||(14588-14668)
[»] scaffold0290 (1 HSPs)
scaffold0290 (21-116)||(11843-11938)
[»] chr1 (1 HSPs)
chr1 (10-116)||(21496562-21496667)
[»] scaffold0207 (1 HSPs)
scaffold0207 (36-110)||(752-827)
[»] scaffold0094 (1 HSPs)
scaffold0094 (10-116)||(2509-2609)
[»] scaffold0381 (1 HSPs)
scaffold0381 (77-116)||(11518-11557)


Alignment Details
Target: chr7 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 10 - 238
Target Start/End: Complemental strand, 16068172 - 16067944
Alignment:
Q  10 catcatcattctctcatcaaaattcacatcataacagtaacaacatattaaaatttaagacaaccctcccgtcatagattaagataccctaaattgcaaa 109  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16068172 catcatcattttctcatcaaaattcacatcataacagtaacaacatattaaaatttaagacaaccctcccgtcatagattaagataccctaaattgcaaa 16068073  T
Q  110 gattctctctcttacatctaatctatcccctcgttggcctaagatactccttaagagtgtcatctacataataagttggaacagtcactacttgtcatct 209  Q
    ||||||| | |||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16068072 gattctcccccttacatctaatttatccccttgttggcctaagatactccttaagagtgtcatctacataataagttggaacagtcactacttgtcatct 16067973  T
Q  210 aaagaataacatcaatgcttattcatctc 238  Q
    |||||||||||||||||||||||||||||    
T  16067972 aaagaataacatcaatgcttattcatctc 16067944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 17 - 116
Target Start/End: Complemental strand, 9693096 - 9692997
Alignment:
Q  17 attctctcatcaaaattcacatcataacagtaacaacatattaaaatttaagacaaccctcccgtcatagattaagataccctaaattgcaaagattctc 116  Q
    |||||||||||||| ||| ||||||||||  |||||| ||||||||||||||||||||||||| |||||||||||||||| ||||| |||||||||||||    
T  9693096 attctctcatcaaacttctcatcataacatcaacaacttattaaaatttaagacaaccctcccatcatagattaagatactctaaagtgcaaagattctc 9692997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0408 (Bit Score: 158; Significance: 3e-84; HSPs: 1)
Name: scaffold0408
Description:

Target: scaffold0408; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 10 - 231
Target Start/End: Original strand, 14984 - 15205
Alignment:
Q  10 catcatcattctctcatcaaaattcacatcataacagtaacaacatattaaaatttaagacaaccctcccgtcatagattaagataccctaaattgcaaa 109  Q
    ||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| ||||| || | |||||||||||||||||||| | ||||||    
T  14984 catcatcattctctcataaaaattcacatcataacagtaacaacattttaaaatttaagtcaaccttctcctcatagattaagataccctatagtgcaaa 15083  T
Q  110 gattctctctcttacatctaatctatcccctcgttggcctaagatactccttaagagtgtcatctacataataagttggaacagtcactacttgtcatct 209  Q
    ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  ||||| ||||||  ||||||||||||||||    
T  15084 gattctcccccttacatctaatctatcccctcgttggcctaagatactccttaagagtgtcatcttcaacataagctggaaccatcactacttgtcatct 15183  T
Q  210 aaagaataacatcaatgcttat 231  Q
    ||||||||||||||||||||||    
T  15184 aaagaataacatcaatgcttat 15205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 158; Significance: 3e-84; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 10 - 239
Target Start/End: Original strand, 143102 - 143331
Alignment:
Q  10 catcatcattctctcatcaaaattcacatcataacagtaacaacatattaaaatttaagacaaccctcccgtcatagattaagataccctaaattgcaaa 109  Q
    |||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| ||||||||||||||||| |||| || |||    
T  143102 catcatcaatctctcatcaaaattcacatcataacagtaacaacattttaaaatttaagacaaccttcccatcatagattaagataccataaagtgaaaa 143201  T
Q  110 gattctctctcttacatctaatctatcccctcgttggcctaagatactccttaagagtgtcatctacataataagttggaacagtcactacttgtcatct 209  Q
    ||||| | | |||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||   |||| ||||||| ||||||||||||||||    
T  143202 gattcacccccttacatctaatctatccactcgttggcctaagatactccttaagagcgtcatctacaacgtaagctggaacaatcactacttgtcatct 143301  T
Q  210 aaagaataacatcaatgcttattcatctca 239  Q
    ||||||| ||||||||||||||||||||||    
T  143302 aaagaatgacatcaatgcttattcatctca 143331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 158; Significance: 3e-84; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 10 - 231
Target Start/End: Original strand, 14746549 - 14746770
Alignment:
Q  10 catcatcattctctcatcaaaattcacatcataacagtaacaacatattaaaatttaagacaaccctcccgtcatagattaagataccctaaattgcaaa 109  Q
    ||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| ||||| || | |||||||||||||||||||| | ||||||    
T  14746549 catcatcattctctcataaaaattcacatcataacagtaacaacattttaaaatttaagtcaaccttctcctcatagattaagataccctatagtgcaaa 14746648  T
Q  110 gattctctctcttacatctaatctatcccctcgttggcctaagatactccttaagagtgtcatctacataataagttggaacagtcactacttgtcatct 209  Q
    ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  ||||| ||||||  ||||||||||||||||    
T  14746649 gattctcccccttacatctaatctatcccctcgttggcctaagatactccttaagagtgtcatcttcaacataagctggaaccatcactacttgtcatct 14746748  T
Q  210 aaagaataacatcaatgcttat 231  Q
    ||||||||||||||||||||||    
T  14746749 aaagaataacatcaatgcttat 14746770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 67 - 239
Target Start/End: Complemental strand, 22395516 - 22395344
Alignment:
Q  67 agacaaccctcccgtcatagattaagataccctaaattgcaaagattctctctcttacatctaatctatcccctcgttggcctaagatactccttaagag 166  Q
    ||||||||||||| ||||| |||||||||||||||| |||||||| |||| | |||||||| ||| ||||||||| ||||||||||||| |||||| |||    
T  22395516 agacaaccctcccatcatatattaagataccctaaagtgcaaagactctcccccttacatccaatttatcccctcattggcctaagatattccttatgag 22395417  T
Q  167 tgtcatctacataataagttggaacagtcactacttgtcatctaaagaataacatcaatgcttattcatctca 239  Q
     | ||||||||  ||||| ||||||  ||||||||||||||||||||||||||||||||||||||||| ||||    
T  22395416 cggcatctacaacataagctggaaccatcactacttgtcatctaaagaataacatcaatgcttattcacctca 22395344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 10 - 116
Target Start/End: Complemental strand, 19545254 - 19545153
Alignment:
Q  10 catcatcattctctcatcaaaattcacatcataacagtaacaacatattaaaatttaagacaaccctcccgtcatagattaagataccctaaattgcaaa 109  Q
    |||||||||| |||||||||||||||||| ||||||| |||||||||||||     ||||||||||||   |||||||||||||||||||||| ||||||    
T  19545254 catcatcattttctcatcaaaattcacattataacagcaacaacatattaa-----aagacaaccctcatatcatagattaagataccctaaagtgcaaa 19545160  T
Q  110 gattctc 116  Q
    |||||||    
T  19545159 gattctc 19545153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 46
Target Start/End: Complemental strand, 22395551 - 22395515
Alignment:
Q  10 catcatcattctctcatcaaaattcacatcataacag 46  Q
    ||||||| |||||||||||||||||||||||||||||    
T  22395551 catcatctttctctcatcaaaattcacatcataacag 22395515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 165
Target Start/End: Complemental strand, 11796180 - 11796138
Alignment:
Q  123 acatctaatctatcccctcgttggcctaagatactccttaaga 165  Q
    |||| |||||| ||||||||||||| |||||||||||||||||    
T  11796180 acatttaatctttcccctcgttggcataagatactccttaaga 11796138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 125 - 166
Target Start/End: Original strand, 34487909 - 34487950
Alignment:
Q  125 atctaatctatcccctcgttggcctaagatactccttaagag 166  Q
    ||||||||| |||||||||||||||| ||||| |||||||||    
T  34487909 atctaatctctcccctcgttggcctatgatacaccttaagag 34487950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1043 (Bit Score: 154; Significance: 8e-82; HSPs: 1)
Name: scaffold1043
Description:

Target: scaffold1043; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 10 - 238
Target Start/End: Complemental strand, 631 - 402
Alignment:
Q  10 catcatcattctctcatcaaaattcacatcataacagtaacaacatattaaaa-tttaagacaaccctcccgtcatagattaagataccctaaattgcaa 108  Q
    ||||||||||||||||| |||||||| ||||||||||||||||||| |||||| ||||||||||||||| | |||||||||||||||| ||| |||||||    
T  631 catcatcattctctcataaaaattcatatcataacagtaacaacattttaaaaatttaagacaaccctctcatcatagattaagatactctacattgcaa 532  T
Q  109 agattctctctcttacatctaatctatcccctcgttggcctaagatactccttaagagtgtcatctacataataagttggaacagtcactacttgtcatc 208  Q
    |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||| |||||   || ||||||||||||    
T  531 agattctcccccttacatctaatctatcccctcgttggcctaagatactccttaagagtgtcatctacaacataagctggaatcatccctacttgtcatc 432  T
Q  209 taaagaataacatcaatgcttattcatctc 238  Q
    ||||||||||||||||||||||| ||||||    
T  431 taaagaataacatcaatgcttatccatctc 402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 150; Significance: 2e-79; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 10 - 239
Target Start/End: Original strand, 25791827 - 25792056
Alignment:
Q  10 catcatcattctctcatcaaaattcacatcataacagtaacaacatattaaaatttaagacaaccctcccgtcatagattaagataccctaaattgcaaa 109  Q
    ||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| |||||||| ||||||||||||||||||||||| | ||||    
T  25791827 catcatcattctctcatcaaagttcacatcataacagtaacaacattttaaaatttaagaaaaccctcctgtcatagattaagataccctaaagttcaaa 25791926  T
Q  110 gattctctctcttacatctaatctatcccctcgttggcctaagatactccttaagagtgtcatctacataataagttggaacagtcactacttgtcatct 209  Q
    ||||||| |||||||||||||| | ||||||||||| |||||||||||||||||||| ||||||||||  ||||| | ||||   |||||||||||||||    
T  25791927 gattctccctcttacatctaatttgtcccctcgttgacctaagatactccttaagagcgtcatctacagtataagctcgaaccaccactacttgtcatct 25792026  T
Q  210 aaagaataacatcaatgcttattcatctca 239  Q
    ||||||||| ||||||||||||| ||||||    
T  25792027 aaagaataaaatcaatgcttattaatctca 25792056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 72 - 239
Target Start/End: Complemental strand, 25756355 - 25756188
Alignment:
Q  72 accctcccgtcatagattaagataccctaaattgcaaagattctctctcttacatctaatctatcccctcgttggcctaagatactccttaagagtgtca 171  Q
    ||||||| ||||||||||||||||||||||| ||||||||||||| |||||||||||||| | ||||||||||| |||||||||||||||||||| ||||    
T  25756355 accctcctgtcatagattaagataccctaaagtgcaaagattctccctcttacatctaatatgtcccctcgttgacctaagatactccttaagagcgtca 25756256  T
Q  172 tctacataataagttggaacagtcactacttgtcatctaaagaataacatcaatgcttattcatctca 239  Q
    ||||||  ||||| | ||||   |||||||||||||||||||||||| ||||||||||||||||||||    
T  25756255 tctacagtataagctcgaaccaccactacttgtcatctaaagaataaaatcaatgcttattcatctca 25756188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 109 - 239
Target Start/End: Original strand, 19020257 - 19020386
Alignment:
Q  109 agattctctctcttacatctaatctatcccctcgttggcctaagatactccttaagagtgtcatctacataataagttggaacagtcactactt-gtcat 207  Q
    |||||||| | |||||||||||||| |||  || |||||||||||||||||||||||| | |||| |||    ||||||||||  ||||||||| |||||    
T  19020257 agattctcccccttacatctaatctctcc--tcattggcctaagatactccttaagagcgccatcaacaacccaagttggaaccatcactactttgtcat 19020354  T
Q  208 ctaaagaataacatcaatgcttattcatctca 239  Q
    ||||| ||||||||||||||||||||||||||    
T  19020355 ctaaataataacatcaatgcttattcatctca 19020386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 10 - 102
Target Start/End: Original strand, 14137949 - 14138041
Alignment:
Q  10 catcatcattctctcatcaaaattcacatcataacagtaacaacatattaaaatttaagacaaccctcccgtcatagattaagataccctaaa 102  Q
    |||||| ||||  ||||||||||||||| |||||||  ||||||||||||| |||||||||||||||||| ||| | | ||||||||||||||    
T  14137949 catcattattccttcatcaaaattcacagcataacaacaacaacatattaagatttaagacaaccctcccatcaaataataagataccctaaa 14138041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 36 - 116
Target Start/End: Original strand, 32948837 - 32948916
Alignment:
Q  36 catcataacagtaacaacatattaaaatttaagacaaccctcccgtcatagattaagataccctaaattgcaaagattctc 116  Q
    ||||||||||| ||||||||||||||||| |||||||||||||| ||| ||||| |||||| ||||| |||||||||||||    
T  32948837 catcataacagcaacaacatattaaaattaaagacaaccctcccatca-agatttagatactctaaagtgcaaagattctc 32948916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 17 - 79
Target Start/End: Original strand, 23909173 - 23909235
Alignment:
Q  17 attctctcatcaaaattcacatcataacagtaacaacatattaaaatttaagacaaccctccc 79  Q
    |||||||||||||||||| ||||||||||  |||||| |||||||||||||||||||||||||    
T  23909173 attctctcatcaaaattctcatcataacaacaacaacttattaaaatttaagacaaccctccc 23909235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 119; Significance: 6e-61; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 10 - 239
Target Start/End: Original strand, 17419480 - 17419705
Alignment:
Q  10 catcatcattctctcatcaaaattcacatcataacagtaacaacatattaaaatttaagacaaccctcccgtcatagattaagataccctaaattgcaaa 109  Q
    |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||  || || |||||||||||||||||||||| ||||||    
T  17419480 catcatcattctctcatcaaaattcacatcataatagtaacaacattttaaaatttaaaacaaatcttccttcatagattaagataccctaaagtgcaaa 17419579  T
Q  110 gattctctctcttacatctaatctatcccctcgttggcctaagatactccttaagagtgtcatctacataataagttggaacagtcacta-cttgtcatc 208  Q
    ||||||  | |||||     |||||||| |||||||||||||||||||||||||||||  ||||||||  ||||  ||||||  |||||| ||||||||     
T  17419580 gattcttccccttac-----atctatccactcgttggcctaagatactccttaagagtaccatctacaacataaactggaaccatcactaccttgtcata 17419674  T
Q  209 taaagaataacatcaatgcttattcatctca 239  Q
    |||||||||||||||||||||||||||||||    
T  17419675 taaagaataacatcaatgcttattcatctca 17419705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 10 - 116
Target Start/End: Complemental strand, 19727647 - 19727541
Alignment:
Q  10 catcatcattctctcatcaaaattcacatcataacagtaacaacatattaaaatttaagacaaccctcccgtcatagattaagataccctaaattgcaaa 109  Q
    ||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  19727647 catcatcattctctcgtcaaaattcacatcataacagtaacaacattttaaaatttaagacaaccctcccgtcatagattaagataccctaaagtgcaaa 19727548  T
Q  110 gattctc 116  Q
    |||||||    
T  19727547 gattctc 19727541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 10 - 113
Target Start/End: Original strand, 12230807 - 12230910
Alignment:
Q  10 catcatcattctctcatcaaaattcacatcataacagtaacaacatattaaaatttaagacaaccctcccgtcatagattaagataccctaaattgcaaa 109  Q
    |||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| | |||||||||||||||||||| ||||||    
T  12230807 catcatcattctctcatcaaaattcacatcataatagcaacaacatattaaaatttaagacaaccctcccataatagattaagataccctaaagtgcaaa 12230906  T
Q  110 gatt 113  Q
    ||||    
T  12230907 gatt 12230910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 158 - 239
Target Start/End: Complemental strand, 19727538 - 19727457
Alignment:
Q  158 ccttaagagtgtcatctacataataagttggaacagtcactacttgtcatctaaagaataacatcaatgcttattcatctca 239  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19727538 ccttaagagtgtcatctacaacataagttggaacagtcactacttgtcatctaaagaataacatcaatgcttattcatctca 19727457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 10 - 116
Target Start/End: Original strand, 13268018 - 13268124
Alignment:
Q  10 catcatcattctctcatcaaaattcacatcataacagtaacaacatattaaaatttaagacaaccctcccgtcatagattaagataccctaaattgcaaa 109  Q
    ||||||||||||||| ||||||||||||||||||||  |||||  ||||||||||||||| ||||||||| ||||| |||||||||||||||| ||||||    
T  13268018 catcatcattctctcgtcaaaattcacatcataacaacaacaatgtattaaaatttaagaaaaccctcccatcataaattaagataccctaaagtgcaaa 13268117  T
Q  110 gattctc 116  Q
    |||||||    
T  13268118 gattctc 13268124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 17 - 116
Target Start/End: Complemental strand, 13559473 - 13559374
Alignment:
Q  17 attctctcatcaaaattcacatcataacagtaacaacatattaaaatttaagacaaccctcccgtcatagattaagataccctaaattgcaaagattctc 116  Q
    |||||||||||||| ||| ||||||||||  |||||| ||||||||||||||||||||||||| |||||||||||||||| ||||| |||||||||||||    
T  13559473 attctctcatcaaacttctcatcataacatcaacaacttattaaaatttaagacaaccctcccatcatagattaagatactctaaagtgcaaagattctc 13559374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 10 - 116
Target Start/End: Complemental strand, 15871061 - 15870955
Alignment:
Q  10 catcatcattctctcatcaaaattcacatcataacagtaacaacatattaaaatttaagacaaccctcccgtcatagattaagataccctaaattgcaaa 109  Q
    ||||||||||| |||||||||||| |||||||||||| || |    |||||||||||||||||||||||| ||||| |||||||||||||||| ||||||    
T  15871061 catcatcattcactcatcaaaatttacatcataacagaaaaagtgcattaaaatttaagacaaccctcccatcataaattaagataccctaaagtgcaaa 15870962  T
Q  110 gattctc 116  Q
    |||||||    
T  15870961 gattctc 15870955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 10 - 116
Target Start/End: Complemental strand, 18554830 - 18554729
Alignment:
Q  10 catcatcattctctcatcaaaattcacatcataacagtaacaacatattaaaatttaagacaaccctcccgtcatagattaagataccctaaattgcaaa 109  Q
    |||||||||| |||||||||||||||||||||||||| |||||||||||||     ||||||||||||   |||||||||||||||||||||| ||||||    
T  18554830 catcatcattttctcatcaaaattcacatcataacagcaacaacatattaa-----aagacaaccctcatatcatagattaagataccctaaagtgcaaa 18554736  T
Q  110 gattctc 116  Q
    |||||||    
T  18554735 gattctc 18554729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 10 - 124
Target Start/End: Complemental strand, 15888636 - 15888522
Alignment:
Q  10 catcatcattctctcatcaaaattcacatcataacagtaacaacatattaaaatttaagacaaccctcccgtcatagattaagataccctaaattgcaaa 109  Q
    ||||||||||| |||||||| ||| |||||||||||| || |    |||||||||||||||||||||||| ||||| ||| ||||| |||||| ||||||    
T  15888636 catcatcattcactcatcaatatttacatcataacagcaaaagtgcattaaaatttaagacaaccctcccatcataaatttagatatcctaaagtgcaaa 15888537  T
Q  110 gattctctctcttac 124  Q
    ||||||| |||||||    
T  15888536 gattctccctcttac 15888522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 114
Target Start/End: Original strand, 13235237 - 13235326
Alignment:
Q  15 tcattctctcatcaaaattcacatcataacagtaacaacatattaaaatttaagacaaccctcccgtcatagattaagataccctaaattgcaaagattc 114  Q
    |||||||||| |||||||||||||||||||| ||||||||||||||          |||||| |||||||| ||||| |||||||||| |||||||||||    
T  13235237 tcattctctcgtcaaaattcacatcataacactaacaacatattaa----------aacccttccgtcataaattaatataccctaaagtgcaaagattc 13235326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 77 - 116
Target Start/End: Original strand, 9886987 - 9887026
Alignment:
Q  77 cccgtcatagattaagataccctaaattgcaaagattctc 116  Q
    ||||||||| |||||||||||||||| |||||||||||||    
T  9886987 cccgtcatatattaagataccctaaagtgcaaagattctc 9887026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 95; Significance: 1e-46; HSPs: 2)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 109 - 239
Target Start/End: Complemental strand, 16680 - 16550
Alignment:
Q  109 agattctctctcttacatctaatctatcccctcgttggcctaagatactccttaagagtgtcatctacataataagttggaacagtcactacttgtcatc 208  Q
    |||||||| | |||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||   |||| ||||||| |||||||||||||||    
T  16680 agattctcccccttacatctaatctatccactcgttggcctaagatactccttaagagcgtcatctacaacgtaagctggaacaatcactacttgtcatc 16581  T
Q  209 taaagaataacatcaatgcttattcatctca 239  Q
    |||||||||||||||||||||||||||||||    
T  16580 taaagaataacatcaatgcttattcatctca 16550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 109 - 239
Target Start/End: Complemental strand, 25738 - 25608
Alignment:
Q  109 agattctctctcttacatctaatctatcccctcgttggcctaagatactccttaagagtgtcatctacataataagttggaacagtcactacttgtcatc 208  Q
    |||||||| | |||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||   |||| ||||||| |||||||||||||||    
T  25738 agattctcccccttacatctaatctatccactcgttggcctaagatactccttaagagcgtcatctacaacgtaagctggaacaatcactacttgtcatc 25639  T
Q  209 taaagaataacatcaatgcttattcatctca 239  Q
    |||||||||||||||||||||||||||||||    
T  25638 taaagaataacatcaatgcttattcatctca 25608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 79; Significance: 5e-37; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 10 - 116
Target Start/End: Complemental strand, 29718211 - 29718105
Alignment:
Q  10 catcatcattctctcatcaaaattcacatcataacagtaacaacatattaaaatttaagacaaccctcccgtcatagattaagataccctaaattgcaaa 109  Q
    ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||| || |||||||||||||||| ||||| ||||||    
T  29718211 catcatcattctctcatcaaaattcacatcataacaacaacaacatattaaaatttaagacaacccttccatcatagattaagatactctaaagtgcaaa 29718112  T
Q  110 gattctc 116  Q
     ||||||    
T  29718111 tattctc 29718105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 48 - 116
Target Start/End: Complemental strand, 18985350 - 18985282
Alignment:
Q  48 aacaacatattaaaatttaagacaaccctcccgtcatagattaagataccctaaattgcaaagattctc 116  Q
    |||||||||||||||||||| ||||||||||  |||||||||| ||||||||||  |||||||||||||    
T  18985350 aacaacatattaaaatttaatacaaccctcctatcatagattacgataccctaatgtgcaaagattctc 18985282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 29 - 116
Target Start/End: Complemental strand, 26861307 - 26861220
Alignment:
Q  29 aaattcacatcataacagtaacaacatattaaaatttaagacaaccctcccgtcatagattaagataccctaaattgcaaagattctc 116  Q
    ||||| ||| |||||||| || || |||||||||||||| |||||||| || |||| ||||||||||||||||| |||||||| ||||    
T  26861307 aaattaacaccataacagcaataatatattaaaatttaatacaacccttccatcatggattaagataccctaaagtgcaaagaatctc 26861220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 239
Target Start/End: Original strand, 22521725 - 22521805
Alignment:
Q  160 ttaagagtgtcatctacataataagttggaacagtcactactt-gtcatctaaagaataacatcaatgcttattcatctca 239  Q
    ||||||| | ||||||||  | |||||| |||  ||||||||| |||||||||| ||||||||||||| ||||||||||||    
T  22521725 ttaagagcgccatctacaacacaagttgtaaccatcactactttgtcatctaaaaaataacatcaatggttattcatctca 22521805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 10 - 115
Target Start/End: Original strand, 11955 - 12060
Alignment:
Q  10 catcatcattctctcatcaaaattcacatcataacagtaacaacatattaaaatttaagacaaccctcccgtcatagattaagataccctaaattgcaaa 109  Q
    ||||||||||||||||||||||||||||||||||||| |||||   |||||||||||||||||||||||| ||||| |||||||||||||||| ||||||    
T  11955 catcatcattctctcatcaaaattcacatcataacagcaacaatgaattaaaatttaagacaaccctcccatcataaattaagataccctaaagtgcaaa 12054  T
Q  110 gattct 115  Q
     |||||    
T  12055 tattct 12060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 74; Significance: 5e-34; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 10 - 115
Target Start/End: Original strand, 21977104 - 21977209
Alignment:
Q  10 catcatcattctctcatcaaaattcacatcataacagtaacaacatattaaaatttaagacaaccctcccgtcatagattaagataccctaaattgcaaa 109  Q
    ||||||||||| ||||||||||||||||||||||||| |||||  |||||||||||||||||||||| || ||||| |||||||||||||||| ||||||    
T  21977104 catcatcattcactcatcaaaattcacatcataacagcaacaatgtattaaaatttaagacaacccttccatcataaattaagataccctaaagtgcaaa 21977203  T
Q  110 gattct 115  Q
    ||||||    
T  21977204 gattct 21977209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 10 - 115
Target Start/End: Original strand, 21999535 - 21999640
Alignment:
Q  10 catcatcattctctcatcaaaattcacatcataacagtaacaacatattaaaatttaagacaaccctcccgtcatagattaagataccctaaattgcaaa 109  Q
    ||||||||||| ||||||||||||||||||||||||| |||||  |||||||||||||||||||||| || ||||| |||||||||||||||| ||||||    
T  21999535 catcatcattcactcatcaaaattcacatcataacagcaacaatgtattaaaatttaagacaacccttccatcataaattaagataccctaaagtgcaaa 21999634  T
Q  110 gattct 115  Q
    ||||||    
T  21999635 gattct 21999640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 12 - 115
Target Start/End: Original strand, 22161732 - 22161835
Alignment:
Q  12 tcatcattctctcatcaaaattcacatcataacagtaacaacatattaaaatttaagacaaccctcccgtcatagattaagataccctaaattgcaaaga 111  Q
    ||||||||| ||||||||||||||||||||||||| |||||  |||| ||||||||||||||||| || ||||| |||||||||||||||| ||||||||    
T  22161732 tcatcattcactcatcaaaattcacatcataacagcaacaatgtattcaaatttaagacaacccttccatcataaattaagataccctaaagtgcaaaga 22161831  T
Q  112 ttct 115  Q
    ||||    
T  22161832 ttct 22161835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 10 - 116
Target Start/End: Original strand, 19186781 - 19186887
Alignment:
Q  10 catcatcattctctcatcaaaattcacatcataacagtaacaacatattaaaatttaagacaaccctcccgtcatagattaagataccctaaattgcaaa 109  Q
    ||||||||||| || |||||||||||||||||||||| |||||  |||||||||||||||| |||| ||| ||||| |||||||||||||||| ||||||    
T  19186781 catcatcattcactgatcaaaattcacatcataacagcaacaatgtattaaaatttaagacgacccacccatcataaattaagataccctaaagtgcaaa 19186880  T
Q  110 gattctc 116  Q
    |||||||    
T  19186881 gattctc 19186887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 17 - 116
Target Start/End: Original strand, 10341062 - 10341161
Alignment:
Q  17 attctctcatcaaaattcacatcataacagtaacaacatattaaaatttaagacaaccctcccgtcatagattaagataccctaaattgcaaagattctc 116  Q
    |||||||||||||||||| ||||||||||  |||||| |||||||||||||||||| ||||||  ||||||||||||||||||||| |||||| ||||||    
T  10341062 attctctcatcaaaattctcatcataacatcaacaacttattaaaatttaagacaatcctcccaccatagattaagataccctaaagtgcaaatattctc 10341161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 36 - 116
Target Start/End: Original strand, 10302744 - 10302824
Alignment:
Q  36 catcataacagtaacaacatattaaaatttaagacaaccctcccgtcatagattaagataccctaaattgcaaagattctc 116  Q
    ||||||||||  |||||| ||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||    
T  10302744 catcataacatcaacaacttattaaaatttaagacaaccctcccatcatagattaagataccctaaagtgcaaagattctc 10302824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 10 - 116
Target Start/End: Complemental strand, 16357933 - 16357828
Alignment:
Q  10 catcatcattctctcatcaaaattcacatcataacagtaacaacatattaaaatttaagacaaccctcccgtcatagattaagataccctaaattgcaaa 109  Q
    ||||||||||| |||||||| ||| |||||||||||| || |    ||||||||||||||||||| |||| ||||| |||||||||||||||| ||||||    
T  16357933 catcatcattcactcatcaacatttacatcataacagcaaaagtgcattaaaatttaagacaacc-tcccatcataaattaagataccctaaagtgcaaa 16357835  T
Q  110 gattctc 116  Q
    |||||||    
T  16357834 gattctc 16357828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 124
Target Start/End: Original strand, 16928556 - 16928663
Alignment:
Q  15 tcattctctcatcaaaattcacatcataacagtaacaacatattaaaatttaagacaaccc-tcccgtcatagattaagataccctaaattgcaaagatt 113  Q
    |||| ||||| || ||||||||| |||||||   ||||||||||||||||||||||||||| | || ||||||||||||||||  |||| || ||| |||    
T  16928556 tcatcctctcgtccaaattcacaccataaca---acaacatattaaaatttaagacaaccctttccatcatagattaagatactttaaagtgaaaatatt 16928652  T
Q  114 ctctctcttac 124  Q
    ||||| |||||    
T  16928653 ctctcccttac 16928663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 70; Significance: 1e-31; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 10 - 115
Target Start/End: Complemental strand, 10454186 - 10454081
Alignment:
Q  10 catcatcattctctcatcaaaattcacatcataacagtaacaacatattaaaatttaagacaaccctcccgtcatagattaagataccctaaattgcaaa 109  Q
    |||||||||||||||||||||||||||| |||||||| || ||||||||||||| || |||||||| ||| |||||||||||||||||||||| | ||||    
T  10454186 catcatcattctctcatcaaaattcacaccataacagcaaaaacatattaaaatataggacaacccacccatcatagattaagataccctaaagttcaaa 10454087  T
Q  110 gattct 115  Q
    ||||||    
T  10454086 gattct 10454081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 13 - 70
Target Start/End: Complemental strand, 17861441 - 17861384
Alignment:
Q  13 catcattctctcatcaaaattcacatcataacagtaacaacatattaaaatttaagac 70  Q
    |||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||    
T  17861441 catcattctctcatcaaaattcacgtcataacagtaacaacattttaaaatttaagac 17861384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 10 - 62
Target Start/End: Original strand, 1683229 - 1683281
Alignment:
Q  10 catcatcattctctcatcaaaattcacatcataacagtaacaacatattaaaa 62  Q
    |||||||| |||||||||||||||||||||||||| | |||||||||||||||    
T  1683229 catcatcagtctctcatcaaaattcacatcataaccgcaacaacatattaaaa 1683281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 10 - 116
Target Start/End: Original strand, 15727753 - 15727862
Alignment:
Q  10 catcatcattctctcatcaaaattcacatcataacagtaacaacatattaaaatttaagacaaccc------tcccgtcatagattaagataccctaaat 103  Q
    |||| |||| ||||||| |||||||||||||||||   |||||||||||||||| ||| |||||||      |||| ||||||||||||||||||||||     
T  15727753 catcttcatcctctcataaaaattcacatcataac---aacaacatattaaaatctaatacaaccctctcaatcccatcatagattaagataccctaaag 15727849  T
Q  104 tgcaaagattctc 116  Q
    || || |||||||    
T  15727850 tgtaaggattctc 15727862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 58
Target Start/End: Original strand, 1681192 - 1681239
Alignment:
Q  11 atcatcattctctcatcaaaattcacatcataacagtaacaacatatt 58  Q
    ||||||| |||||||||||||||||||||||||| | |||||||||||    
T  1681192 atcatcagtctctcatcaaaattcacatcataaccgcaacaacatatt 1681239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0385 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 10 - 116
Target Start/End: Original strand, 16144 - 16250
Alignment:
Q  10 catcatcattctctcatcaaaattcacatcataacagtaacaacatattaaaatttaagacaaccctcccgtcatagattaagataccctaaattgcaaa 109  Q
    ||||||||||| |||||||||||||||||||||| || |||||  |||||||||||||||| |||||||| ||||| |||||||||||||||| | ||||    
T  16144 catcatcattcactcatcaaaattcacatcataaaagcaacaatgtattaaaatttaagacgaccctcccatcataaattaagataccctaaagtacaaa 16243  T
Q  110 gattctc 116  Q
    |||||||    
T  16244 gattctc 16250  T

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Target: scaffold0364 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0364
Description:

Target: scaffold0364; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 36 - 116
Target Start/End: Original strand, 14588 - 14668
Alignment:
Q  36 catcataacagtaacaacatattaaaatttaagacaaccctcccgtcatagattaagataccctaaattgcaaagattctc 116  Q
    ||||||||||| ||||||||||| ||||| |||||||||||||| |||||||||||||||||||||| |||||||||||||    
T  14588 catcataacagcaacaacatattgaaattaaagacaaccctcccatcatagattaagataccctaaagtgcaaagattctc 14668  T

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Target: scaffold0290 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0290
Description:

Target: scaffold0290; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 21 - 116
Target Start/End: Complemental strand, 11938 - 11843
Alignment:
Q  21 tctcatcaaaattcacatcataacagtaacaacatattaaaatttaagacaaccctcccgtcatagattaagataccctaaattgcaaagattctc 116  Q
    ||||||||||||| |||||||||||| |||||||||||||||||||| ||||||||||  ||||| |||| || |||||||| |||||||||||||    
T  11938 tctcatcaaaatttacatcataacagcaacaacatattaaaatttaatacaaccctcctatcataaattacgacaccctaaagtgcaaagattctc 11843  T

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Target: chr1 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 10 - 116
Target Start/End: Original strand, 21496562 - 21496667
Alignment:
Q  10 catcatcattctctcatcaaaattcacatcataacagtaacaacatattaaaatttaagacaaccctcccgtcatagattaagataccctaaattgcaaa 109  Q
    ||||||||||||||||| || ||||| ||||||  || ||||||||||| |||||||||| |||||||||  ||||||||||||||||||||| ||||||    
T  21496562 catcatcattctctcataaatattcatatcatattagaaacaacatatttaaatttaagataaccctccc-acatagattaagataccctaaagtgcaaa 21496660  T
Q  110 gattctc 116  Q
    |||||||    
T  21496661 gattctc 21496667  T

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Target: scaffold0207 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0207
Description:

Target: scaffold0207; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 36 - 110
Target Start/End: Complemental strand, 827 - 752
Alignment:
Q  36 catcataacagtaacaacata-ttaaaatttaagacaaccctcccgtcatagattaagataccctaaattgcaaag 110  Q
    ||||||||||| ||||||||| |||||||| |||||||||||||  |||||||||||||||||||||| |||||||    
T  827 catcataacagcaacaacataattaaaattaaagacaaccctccaatcatagattaagataccctaaagtgcaaag 752  T

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Target: scaffold0094 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 10 - 116
Target Start/End: Complemental strand, 2609 - 2509
Alignment:
Q  10 catcatcattctctcatcaaaattcacatcataacagtaacaacatattaaaatttaagacaaccctcccgtcatagattaagataccctaaattgcaaa 109  Q
    |||||||||| |||| ||||||||||||||||| ||| ||||||||||||||||     | |||||||   |||||||||||||||||||||| ||||||    
T  2609 catcatcattttctcgtcaaaattcacatcataccagcaacaacatattaaaat-----ataaccctcatatcatagattaagataccctaaa-tgcaaa 2516  T
Q  110 gattctc 116  Q
    |||||||    
T  2515 gattctc 2509  T

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Target: scaffold0381 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0381
Description:

Target: scaffold0381; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 77 - 116
Target Start/End: Complemental strand, 11557 - 11518
Alignment:
Q  77 cccgtcatagattaagataccctaaattgcaaagattctc 116  Q
    ||||||||| |||||||||||||||| |||||||||||||    
T  11557 cccgtcatatattaagataccctaaagtgcaaagattctc 11518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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