View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1859_low_12 (Length: 223)
Name: NF1859_low_12
Description: NF1859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1859_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 171; Significance: 5e-92; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 7 - 205
Target Start/End: Original strand, 11315177 - 11315375
Alignment:
| Q |
7 |
gtgagaagaaattaggcaaaagcagcaatgctgataaggcggttgtatatggcgctgctgtccacgctgctatgttgagtgttaagcaaaagtttccttt |
106 |
Q |
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| T |
11315177 |
gtgagaagaaattatgcaaaagcatcaatgctgataaggcggttgcatatggcgctgctgtccacgctgctatgttgagtgttaagcagaagtttccttt |
11315276 |
T |
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| Q |
107 |
gagggaggtcaatcctttgtccctgggattgaaaacaccaggagaaatcatggacataataattcctaggaataccaaaattcctaggaatatggaaaa |
205 |
Q |
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| T |
11315277 |
gagggaggtcattcctttgtccctgggattgaaaacaccaggagaaatcatggacataataagtcctaggaacaccaaaattcctaggaatatggaaaa |
11315375 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 87
Target Start/End: Complemental strand, 11155979 - 11155914
Alignment:
| Q |
22 |
gcaaaagcagcaatgctgataaggcggttgtatatggcgctgctgtccacgctgctatgttgagtg |
87 |
Q |
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| T |
11155979 |
gcaaaagcatcaatgtcgatgaggcggtggcatatggcgctgctgtccatgcttctatattgagtg |
11155914 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 87
Target Start/End: Complemental strand, 11196432 - 11196367
Alignment:
| Q |
22 |
gcaaaagcagcaatgctgataaggcggttgtatatggcgctgctgtccacgctgctatgttgagtg |
87 |
Q |
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| T |
11196432 |
gcaaaagcatcaatgtcgatgaggcggtggcatatggcgctgctgtccatgcttctatattgagtg |
11196367 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 87
Target Start/End: Complemental strand, 11199422 - 11199357
Alignment:
| Q |
22 |
gcaaaagcagcaatgctgataaggcggttgtatatggcgctgctgtccacgctgctatgttgagtg |
87 |
Q |
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| T |
11199422 |
gcaaaagcatcaatgtcgatgaggcggtggcatatggcgctgctgtccatgcttctatattgagtg |
11199357 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 87
Target Start/End: Complemental strand, 11275648 - 11275583
Alignment:
| Q |
22 |
gcaaaagcagcaatgctgataaggcggttgtatatggcgctgctgtccacgctgctatgttgagtg |
87 |
Q |
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| T |
11275648 |
gcaaaagcatcaatgcagatgaggcggttgcatatggcgctgctatccatgcttttatattgagtg |
11275583 |
T |
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