View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1859_low_3 (Length: 362)
Name: NF1859_low_3
Description: NF1859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1859_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 8 - 340
Target Start/End: Complemental strand, 44591457 - 44591126
Alignment:
| Q |
8 |
ataatactagcgtggttgaaagttgtaatttgattgaacgtcagcgtaaacttattttggcaagtatgatgtgagttagaagttctacgttacttcaaaa |
107 |
Q |
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| T |
44591457 |
ataatactagcgtggttgaaagttgtaagttgattgaacgttagtgtaaacttattttggcaagtatgatgtgagttagaagttctacgttacttcaaaa |
44591358 |
T |
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| Q |
108 |
agtaaagattgagcaagatataattgagagaactcacaaatcaaatgctttatgagttaaactgtggtgtctaactcaactgtatagttaatctatattc |
207 |
Q |
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| T |
44591357 |
agtaaagattgagcaagatataattgagagaactcacaaattaaatgctttatgagttaaactgtggtgtctaactcaactctgtagttaatctttatcc |
44591258 |
T |
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| Q |
208 |
aatgtggatgatctcttgaactccctcgatgatcaggtctaactttatacattttagaagaagggagtgtgaatattaagagccattagagttagaccaa |
307 |
Q |
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| T |
44591257 |
aacgtggatgatctcttgaactccctcgacgatcaggtctaactcaatacattttagaaaaagggagtgtgaata-taagagccattagagttagactaa |
44591159 |
T |
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| Q |
308 |
attgatagatagacccaatccaatccaatccaa |
340 |
Q |
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| T |
44591158 |
attgatagatagacccaatccaatccaatccaa |
44591126 |
T |
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