View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1859_low_4 (Length: 362)

Name: NF1859_low_4

Description: NF1859

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF1859_low_4

[»] chr2 (1 HSPs)

[»] chr8 (1 HSPs)

Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 1)

Name: chr2

Description:

Target: chr2; HSP #1

Raw Score: 197; E-Value: 1e-107

Query Start/End: Original strand, 8 - 278

Target Start/End: Original strand, 28463954 - 28464228

Alignment:

Q	8	cgaataatatggaaacatcctcatcaaaaaatgagtaactaaaaccctata--gtctttcttcaaccacgtgatacgaactcaatcgtctataccaagtg	105	Q
		\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|
T	28463954	cgaacaatatggaaacatcctcatcaaaaaatgagtaactaaaaccctataaagtctttcttcaaccacatgatacgaacccaatcgtctagaccaagtg	28464053	T

Q	106	tatgcatggccttgcatcaagacatcagtaaggtcacagtgtggtgtggagagagcatcagttaatgtttaattaagaaatttattacatattataaaaa	205	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|
T	28464054	tatgcatggccttgcatcaagacatcagtaaggtcacagtgtggtgtggagagagaatcggttaatgtttaattaagaaatttattacatattatagaaa	28464153	T

Q	206	gtactctttccgtcccaaattataagtnnnnnnnnttgtctc--aattataagtcgctttacaatatcaatgaag	278	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	28464154	ctactctttccgtcccaaattataagtaaaaaaaattgtctcaaaattataagtcgctttacaatatcaatgaag	28464228	T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)

Name: chr8

Description:

Target: chr8; HSP #1

Raw Score: 30; E-Value: 0.0000001

Query Start/End: Original strand, 248 - 277

Target Start/End: Original strand, 19713071 - 19713100

Alignment:

Q	248	aattataagtcgctttacaatatcaatgaa	277	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	19713071	aattataagtcgctttacaatatcaatgaa	19713100	T

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