View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1859_low_6 (Length: 319)

Name: NF1859_low_6
Description: NF1859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1859_low_6
NF1859_low_6
[»] chr5 (4 HSPs)
chr5 (122-306)||(28385569-28385753)
chr5 (122-306)||(12540920-12541104)
chr5 (18-77)||(28385465-28385524)
chr5 (18-73)||(12540816-12540871)
[»] chr7 (2 HSPs)
chr7 (125-297)||(3417296-3417468)
chr7 (31-73)||(3417520-3417562)
[»] chr2 (3 HSPs)
chr2 (122-306)||(13440435-13440619)
chr2 (122-304)||(13448598-13448780)
chr2 (124-272)||(13455071-13455219)
[»] chr4 (5 HSPs)
chr4 (122-237)||(48958382-48958497)
chr4 (122-237)||(48912171-48912286)
chr4 (127-201)||(48974349-48974423)
chr4 (18-68)||(48965460-48965510)
chr4 (145-191)||(48965587-48965633)
[»] chr6 (3 HSPs)
chr6 (124-306)||(12589926-12590108)
chr6 (122-305)||(12483222-12483405)
chr6 (45-73)||(12483454-12483482)
[»] scaffold0536 (1 HSPs)
scaffold0536 (122-237)||(6337-6452)
[»] chr8 (1 HSPs)
chr8 (122-199)||(12641345-12641422)


Alignment Details
Target: chr5 (Bit Score: 169; Significance: 1e-90; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 122 - 306
Target Start/End: Original strand, 28385569 - 28385753
Alignment:
Q  122 caggaacaacccatatgaatgggtgacctgatgcttctattgcgcacgcaatctcatatagttgtttatcagagaaatggtttatgcttccaaaacatac 221  Q
    ||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  28385569 caggaacaacccatatgaatgggtgacctgatgcttctactgcgcatgcaatctcatatagttgtttatcagagaaatggtttatgcttccaaaacatat 28385668  T
Q  222 gtacacaactgagttaactcgctgtgatttgagccagttcaggcactcgtgctcgctcacatcactctcgtttcccttctctgct 306  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  28385669 gtacacaactgagttaactcgctgtgatttgagccagttcaggcactcgtgctcgctcacatcactcttgtttcccttctctgct 28385753  T

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Target: chr5; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 122 - 306
Target Start/End: Original strand, 12540920 - 12541104
Alignment:
Q  122 caggaacaacccatatgaatgggtgacctgatgcttctattgcgcacgcaatctcatatagttgtttatcagagaaatggtttatgcttccaaaacatac 221  Q
    ||||||||||||||||||||||||||||   | |||||| ||| || |||||||||||||||||||| ||| ||||||| |||||||||||||||||||     
T  12540920 caggaacaacccatatgaatgggtgacccattccttctactgcacatgcaatctcatatagttgtttgtcaaagaaatgatttatgcttccaaaacatat 12541019  T
Q  222 gtacacaactgagttaactcgctgtgatttgagccagttcaggcactcgtgctcgctcacatcactctcgtttcccttctctgct 306  Q
    |||||| |||||||||||| ||||||| ||||||||| | ||| |||||||||||||| || ||| ||| |||||| || |||||    
T  12541020 gtacaccactgagttaacttgctgtgagttgagccagctaagggactcgtgctcgctcgcagcaccctcatttcccctccctgct 12541104  T

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Target: chr5; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 18 - 77
Target Start/End: Original strand, 28385465 - 28385524
Alignment:
Q  18 acccctgattatgaaacccttctttccaatgtttctctcctcaaatcccttcggcagcca 77  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  28385465 acccctgattatgaaacccttctttccaatgtttctctcctcaaatccctttggcagcca 28385524  T

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Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 73
Target Start/End: Original strand, 12540816 - 12540871
Alignment:
Q  18 acccctgattatgaaacccttctttccaatgtttctctcctcaaatcccttcggca 73  Q
    |||||| || || |||||||| ||||||||||||||||||||||||||||||||||    
T  12540816 acccctaatgatcaaacccttttttccaatgtttctctcctcaaatcccttcggca 12540871  T

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Target: chr7 (Bit Score: 97; Significance: 1e-47; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 125 - 297
Target Start/End: Complemental strand, 3417468 - 3417296
Alignment:
Q  125 gaacaacccatatgaatgggtgacctgatgcttctattgcgcacgcaatctcatatagttgtttatcagagaaatggtttatgcttccaaaacatacgta 224  Q
    ||||||||||||||||||||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||    
T  3417468 gaacaacccatatgaatgggtgacccgatgcttctattgcgtatgcaatctcatatagttgtttatcagagaaatagtttaagcttccaaaacatatgta 3417369  T
Q  225 cacaactgagttaactcgctgtgatttgagccagttcaggcactcgtgctcgctcacatcactctcgtttccc 297  Q
    ||  |||||||||||| | ||||| ||||||||   ||||||||| ||||| ||| || ||| ||||||||||    
T  3417368 caacactgagttaacttgttgtgagttgagccaacgcaggcactcatgctcactctcagcaccctcgtttccc 3417296  T

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Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 31 - 73
Target Start/End: Complemental strand, 3417562 - 3417520
Alignment:
Q  31 aaacccttctttccaatgtttctctcctcaaatcccttcggca 73  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  3417562 aaacccttctttccaatgtttctctcctcaaatcccttcggca 3417520  T

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Target: chr2 (Bit Score: 89; Significance: 7e-43; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 122 - 306
Target Start/End: Original strand, 13440435 - 13440619
Alignment:
Q  122 caggaacaacccatatgaatgggtgacctgatgcttctattgcgcacgcaatctcatatagttgtttatcagagaaatggtttatgcttccaaaacatac 221  Q
    |||||||||||||||||||||||||||  |||||||||||||||||||| |||||||||||||||||||||||||||| ||| ||||||||||||||||     
T  13440435 caggaacaacccatatgaatgggtgactagatgcttctattgcgcacgccatctcatatagttgtttatcagagaaatagttgatgcttccaaaacatat 13440534  T
Q  222 gtacacaactgagttaactcgctgtgatttgagccagttcaggcactcgtgctcgctcacatcactctcgtttcccttctctgct 306  Q
    |||||  || |||||||||  || ||| | ||||||  ||| ||| ||||||  | ||||||||| ||| |||||| ||||||||    
T  13440535 gtacaacaccgagttaactttctctgagtcgagccaactcatgcattcgtgcatgttcacatcaccctcctttcccctctctgct 13440619  T

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Target: chr2; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 122 - 304
Target Start/End: Original strand, 13448598 - 13448780
Alignment:
Q  122 caggaacaacccatatgaatgggtgacctgatgcttctattgcgcacgcaatctcatatagttgtttatcagagaaatggtttatgcttccaaaacatac 221  Q
    |||||||||||||||||||||||||||| ||||||||||| || || || ||||| ||||||||||||||||| |||| ||| ||||||||||||||||     
T  13448598 caggaacaacccatatgaatgggtgaccggatgcttctatcgcacatgccatctcgtatagttgtttatcagaaaaatagttgatgcttccaaaacatat 13448697  T
Q  222 gtacacaactgagttaactcgctgtgatttgagccagttcaggcactcgtgctcgctcacatcactctcgtttcccttctctg 304  Q
    |||||  ||||||||||||| || ||| | ||||||  |||||| ||||||| |  ||||| ||| ||| |||||| ||||||    
T  13448698 gtacaacactgagttaactctctctgaatcgagccaactcaggctctcgtgcacattcacagcaccctcatttcccctctctg 13448780  T

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Target: chr2; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 124 - 272
Target Start/End: Original strand, 13455071 - 13455219
Alignment:
Q  124 ggaacaacccatatgaatgggtgacctgatgcttctattgcgcacgcaatctcatatagttgtttatcagagaaatggtttatgcttccaaaacatacgt 223  Q
    ||||||||||||||||| || ||||||| |||||||| || ||| || ||||||||||||||||||| |||  |||  || |||||||||||||||| ||    
T  13455071 ggaacaacccatatgaacggttgacctgctgcttctagtgagcatgccatctcatatagttgtttattagatgaataattgatgcttccaaaacatatgt 13455170  T
Q  224 acacaactgagttaactcgctgtgatttgagccagttcaggcactcgtg 272  Q
    |||  ||||||||||||| || ||| |  |||||| |||||||||||||    
T  13455171 acaatactgagttaactctctttgagtcaagccagctcaggcactcgtg 13455219  T

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Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 122 - 237
Target Start/End: Original strand, 48958382 - 48958497
Alignment:
Q  122 caggaacaacccatatgaatgggtgacctgatgcttctattgcgcacgcaatctcatatagttgtttatcagagaaatggtttatgcttccaaaacatac 221  Q
    |||||||||||||||  |||  ||||||||||||||||||  | |||||||||||||| |||||||||||||| ||||    |||||||||||| ||||     
T  48958382 caggaacaacccatacaaattcgtgacctgatgcttctatcccacacgcaatctcataaagttgtttatcagataaataacatatgcttccaaagcatat 48958481  T
Q  222 gtacacaactgagtta 237  Q
    |||||  |||||||||    
T  48958482 gtacaacactgagtta 48958497  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 122 - 237
Target Start/End: Complemental strand, 48912286 - 48912171
Alignment:
Q  122 caggaacaacccatatgaatgggtgacctgatgcttctattgcgcacgcaatctcatatagttgtttatcagagaaatggtttatgcttccaaaacatac 221  Q
    ||||||||||||||||||||  |||||  |||||||| ||  |||||||||||||||| ||||||||||| || |||||   |  ||||||||| ||||     
T  48912286 caggaacaacccatatgaattcgtgactcgatgcttcaatcccgcacgcaatctcataaagttgtttatccgaaaaatgacattggcttccaaagcatat 48912187  T
Q  222 gtacacaactgagtta 237  Q
    |||||| || ||||||    
T  48912186 gtacaccaccgagtta 48912171  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 127 - 201
Target Start/End: Original strand, 48974349 - 48974423
Alignment:
Q  127 acaacccatatgaatgggtgacctgatgcttctattgcgcacgcaatctcatatagttgtttatcagagaaatgg 201  Q
    ||||||||||||||| ||||||| ||||||||||||||||  ||||||||||| | ||| |||| || |||||||    
T  48974349 acaacccatatgaattggtgacccgatgcttctattgcgcttgcaatctcatacaattgcttattagtgaaatgg 48974423  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 68
Target Start/End: Original strand, 48965460 - 48965510
Alignment:
Q  18 acccctgattatgaaacccttctttccaatgtttctctcctcaaatccctt 68  Q
    |||||| || || |||||||||||||||||||||||||| || ||||||||    
T  48965460 acccctaataatcaaacccttctttccaatgtttctctcttcgaatccctt 48965510  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 145 - 191
Target Start/End: Original strand, 48965587 - 48965633
Alignment:
Q  145 tgacctgatgcttctattgcgcacgcaatctcatatagttgtttatc 191  Q
    ||||| |||||||||||||| |||||||||||||| || ||||||||    
T  48965587 tgacccgatgcttctattgcacacgcaatctcataaagctgtttatc 48965633  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 124 - 306
Target Start/End: Complemental strand, 12590108 - 12589926
Alignment:
Q  124 ggaacaacccatatgaatgggtgacctgatgcttctattgcgcacgcaatctcatatagttgtttatcagagaaatggtttatgcttccaaaacatacgt 223  Q
    |||| |||||||| ||||  ||| ||||||||||||||  | |||| ||||||||| ||||||||||| ||||||| |  |||||| ||||| |||| ||    
T  12590108 ggaataacccatacgaattcgtggcctgatgcttctatgccacacgaaatctcataaagttgtttatctgagaaatagcatatgctcccaaagcatatgt 12590009  T
Q  224 acacaactgagttaactcgctgtgatttgagccagttcaggcactcgtgctcgctcacatcactctcgtttcccttctctgct 306  Q
    |||  || |||||| ||||||  || || |||||  |||| ||||| ||| || ||||| ||||||| |||||| | ||||||    
T  12590008 acaacacagagttatctcgcttcgagtttagccaactcagacactcttgcacgttcacaacactctcatttcccctatctgct 12589926  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 122 - 305
Target Start/End: Complemental strand, 12483405 - 12483222
Alignment:
Q  122 caggaacaacccatatgaatgggtgacctgatgcttctattgcgcacgcaatctcatatagttgtttatcagagaaatggtttatgcttccaaaacatac 221  Q
    ||||||||||||||||||||   | ||| |||||||||||| |||| | ||| || || || |||||||||||||||| |  || ||| ||||| ||||     
T  12483405 caggaacaacccatatgaattttttacccgatgcttctattccgcatgaaatttcgtaaagctgtttatcagagaaattgcataggctcccaaagcatat 12483306  T
Q  222 gtacacaactgagttaactcgctgtgatttgagccagttcaggcactcgtgctcgctcacatcactctcgtttcccttctctgc 305  Q
    |||||  ||||| ||  || ||| ||| || |||||  |  | ||||| ||| |||||||| |||||||||||||| |||||||    
T  12483305 gtacaacactgaattttcttgctttgagtttagccaactttgacactcatgcacgctcacaacactctcgtttcccctctctgc 12483222  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 73
Target Start/End: Complemental strand, 12483482 - 12483454
Alignment:
Q  45 aatgtttctctcctcaaatcccttcggca 73  Q
    |||||||||||||||||||||||||||||    
T  12483482 aatgtttctctcctcaaatcccttcggca 12483454  T

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Target: scaffold0536 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0536
Description:

Target: scaffold0536; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 122 - 237
Target Start/End: Complemental strand, 6452 - 6337
Alignment:
Q  122 caggaacaacccatatgaatgggtgacctgatgcttctattgcgcacgcaatctcatatagttgtttatcagagaaatggtttatgcttccaaaacatac 221  Q
    ||||||||||||||||||||  |||||| |||||||||||  | || |||||||| || ||||||||||| | |||| ||  || ||||||||| ||||     
T  6452 caggaacaacccatatgaatttgtgacccgatgcttctatcccacatgcaatctcgtaaagttgtttatccgggaaaaggcataagcttccaaagcatat 6353  T
Q  222 gtacacaactgagtta 237  Q
    |||||  |||||||||    
T  6352 gtacaacactgagtta 6337  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 122 - 199
Target Start/End: Complemental strand, 12641422 - 12641345
Alignment:
Q  122 caggaacaacccatatgaatgggtgacctgatgcttctattgcgcacgcaatctcatatagttgtttatcagagaaat 199  Q
    |||||||||||||||  |||  |||||||||   ||||||| ||| ||||||||| || |||||||||||||||||||    
T  12641422 caggaacaacccatacaaattcgtgacctgaattttctattccgctcgcaatctcgtaaagttgtttatcagagaaat 12641345  T

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