View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1859_low_7 (Length: 292)
Name: NF1859_low_7
Description: NF1859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1859_low_7 |
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| [»] scaffold0013 (1 HSPs) |
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Alignment Details
Target: scaffold0013 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 274
Target Start/End: Original strand, 38762 - 39035
Alignment:
| Q |
1 |
gcaaatttaaacgtcccataaccttgagttctctgaatttcttgcaactccttgaaatttcttgaaaaatataatttggatattctatggtaggcattgt |
100 |
Q |
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| T |
38762 |
gcaaatttaaacgtcccataaccttgagttctctgaatttcttgcaactccttgaaatttcttgaaaaatataatttggatattctatggtaggcattgt |
38861 |
T |
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| Q |
101 |
cattgactctagatctttccatcccataatagcctttcgcattaccactttgttgattctgttccaagatacgaagactaatcgtcttagaagtggacac |
200 |
Q |
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| T |
38862 |
cattgactctagatctttccatcctttaatagcctttcgcattaccactttgttgattctgttccaagatacgaagactaatcgtcttagaagtggacac |
38961 |
T |
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| Q |
201 |
ctgtgacaacatattcaatacaatcattcatcatctaatttaatactatgatactctaattagtagttccaaaa |
274 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |||||| |
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| T |
38962 |
ctgtgacaacatattcaatacaatcattcatcatcgaatttaatactataatactctaattagtagtcccaaaa |
39035 |
T |
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Target: chr1 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 15 - 203
Target Start/End: Complemental strand, 45656266 - 45656078
Alignment:
| Q |
15 |
cccataaccttgagttctctgaatttcttgcaactccttgaaatttcttgaaaaatataatttggatattctatggtaggcattgtcattgactctagat |
114 |
Q |
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|||||||||||||||||||| || ||||||||| | |||| ||||||| ||||| ||| |||| | |||| ||||||||||| ||||| |||| |
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| T |
45656266 |
cccataaccttgagttctctaaagttcttgcaatgctttgagatttcttcaaaaacatatcggggattatatatgcctggcattgtcatagactcaagat |
45656167 |
T |
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| Q |
115 |
ctttccatcccataatagcctttcgcattaccactttgttgattctgttccaagatacgaagactaatcgtcttagaagtggacacctg |
203 |
Q |
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||||||| || |||| |||||||| ||| ||| | | || |||| |||||| ||||| ||||||| |||||||| ||||||||||||| |
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| T |
45656166 |
ctttccagcctctaattgcctttcgaattcccattctttttattcggttccacgatacaaagactagtcgtcttacaagtggacacctg |
45656078 |
T |
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