View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1859_low_8 (Length: 263)
Name: NF1859_low_8
Description: NF1859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1859_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 232; Significance: 1e-128; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 14 - 245
Target Start/End: Original strand, 31457665 - 31457896
Alignment:
| Q |
14 |
agatagtgtttgcattttatgtgttagaaggatctctctattttactaaattctatccatggattcaatgtgactgccaaaaatgatgttattgttagtg |
113 |
Q |
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| T |
31457665 |
agatagtgtttgcattttatgtgttagaaggatctctctattttactaaattctatccatggattcaatgtgactgccaaaaatgatgttattgttagtg |
31457764 |
T |
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| Q |
114 |
cgttgacattcttctgatactcaaaaacgtgccattttctcataaaaacatcatattgcatatcaacgtcgactttggaaatgcatgcgactctttccat |
213 |
Q |
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| T |
31457765 |
cgttgacattcttctgatactcaaaaacgtgccattttctcataaaaacatcatattgcatatcaacgtcgactttggaaatgcatgcgactctttccat |
31457864 |
T |
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| Q |
214 |
gcagaataagttatccatccaaagcgccacat |
245 |
Q |
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| T |
31457865 |
gcagaataagttatccatccaaagcgccacat |
31457896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 27 - 245
Target Start/End: Original strand, 31447995 - 31448213
Alignment:
| Q |
27 |
attttatgtgttagaaggatctctctattttactaaattctatccatggattcaatgtgactgccaaaaatgatgttattgttagtgcgttgacattctt |
126 |
Q |
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| T |
31447995 |
attttatgtattagaaggatctctctatttttctaaattatgtccatggattcaatgtgactgccaaaaatgatgttattgttagtgcgttgacattctt |
31448094 |
T |
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| Q |
127 |
ctgatactcaaaaacgtgccattttctcataaaaa---catcatattgcatatcaacgtcgactttggaaatgcatgcgactctttccatgcagaataag |
223 |
Q |
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| T |
31448095 |
ctgatactcaaaaacgtgccattttctcataaaaacagcatcatattgcatatcaatgt---ctttggaaatgcatgcgactctttccatgcagaataag |
31448191 |
T |
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| Q |
224 |
ttatccatccaaagcgccacat |
245 |
Q |
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| T |
31448192 |
ttatccatccaaagcgccacat |
31448213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 14 - 103
Target Start/End: Original strand, 31444054 - 31444148
Alignment:
| Q |
14 |
agatagtgtttgcattttatgtgttagaaggatctctcta-----ttttactaaattctatccatggattcaatgtgactgccaaaaatgatgtt |
103 |
Q |
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| T |
31444054 |
agattgtgtttccattttatgtgttaaaaggatctctctattctattttactaaattcagtccatggattcaatatgactgccaaaaatgatgtt |
31444148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 186 - 230
Target Start/End: Original strand, 31444200 - 31444244
Alignment:
| Q |
186 |
ctttggaaatgcatgcgactctttccatgcagaataagttatcca |
230 |
Q |
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| T |
31444200 |
ctttggagatgcatgcgactctttccatgcagaataagctatcca |
31444244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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