View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18600_high_1 (Length: 607)
Name: NF18600_high_1
Description: NF18600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18600_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 402; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 175 - 592
Target Start/End: Complemental strand, 6706082 - 6705665
Alignment:
| Q |
175 |
tggcttcaattaagcataggtaatacggccgtgaccacaaccacgaaacatggtcgtgatcataaccagactccaacaagcagttcaggcttgttggagc |
274 |
Q |
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| T |
6706082 |
tggcttcaattaagcataggtaatacggccgtgaccacaaccacgaaacatggtcgtgatcataaccagactccaacaagcagttcaggcttgctggagc |
6705983 |
T |
|
| Q |
275 |
ttgagttgttaccaacaaattgggctgcttcgcggcccaatttggagcaaccatcgaccagaggttgctcaaattttaattcttctttgtttttcgaaca |
374 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
6705982 |
ttgagttgttaccaacaaattgggctgcttcgcggcccaatttggagcaaccatcgaccagaggttgctcaaattttaattcttctttgttttttgaaca |
6705883 |
T |
|
| Q |
375 |
aacgacatcttcctcatcttcttcgtccttgtccatatctatgtcaatgccaagtggtccaacctatggtcatcaacaacaacatcaacatctagtacca |
474 |
Q |
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| T |
6705882 |
aacgacatcttcctcatcttcttcgtccttgtccatatctatgtcaatgccaagtggtccaacctatggtcatcaacaacaacatcaacatctagtacca |
6705783 |
T |
|
| Q |
475 |
cataactgggcatttggtccattattaccacactcaatggcaattaatatgccttcttctacagcttatgttccatcttcttctttatcacaatcttgtt |
574 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |
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| T |
6705782 |
cataactgggcatttggtccattattaccacactcaatggcaattaatatgccttcttctacatcttatattccatcttcttctttatcacaatcttgtt |
6705683 |
T |
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| Q |
575 |
cttctttaaggccatctt |
592 |
Q |
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| T |
6705682 |
cttctttaaggccatctt |
6705665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 12 - 102
Target Start/End: Complemental strand, 6706245 - 6706155
Alignment:
| Q |
12 |
atcatcatcaagacttaacactatcaccaccactactcatcacaacgaacttgaacccgaacccgaaggagaaaccatttcaacctcaaag |
102 |
Q |
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| T |
6706245 |
atcatcatcaagactcaacactatcaccaccactactcatcacaacgaacttgaacccgaacccgaaggagaaaccatttcaacctcaaag |
6706155 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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