View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18600_high_10 (Length: 443)
Name: NF18600_high_10
Description: NF18600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18600_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 206; Significance: 1e-112; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 19 - 224
Target Start/End: Complemental strand, 9586802 - 9586597
Alignment:
| Q |
19 |
attttcaattgtttgttggtttgagttgtttgttctctcgtcgtacattactttttaaattttaaatagttggatcatcgcattagagggtttgtcattt |
118 |
Q |
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| T |
9586802 |
attttcaattgtttgttggtttgagttgtttgttctctcgtcgtacattactttttaaattttaaatagttggatcatcgcattagagggtttgtcattt |
9586703 |
T |
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| Q |
119 |
gattttttaagatttgagttacgatttagatgataaaatgttcttaatgcggcaacaatttcttaatgtctgaaaacataaaagatagaacaatatggta |
218 |
Q |
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| T |
9586702 |
gattttttaagatttgagttacgatttagatgataaaatgttcttaatgcggcaacaatttcttaatgtctgaaaacataaaagatagaacaatatggta |
9586603 |
T |
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| Q |
219 |
gttgtt |
224 |
Q |
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|||||| |
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| T |
9586602 |
gttgtt |
9586597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 107 - 150
Target Start/End: Original strand, 2502591 - 2502634
Alignment:
| Q |
107 |
ggtttgtcatttgattttttaagatttgagttacgatttagatg |
150 |
Q |
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| T |
2502591 |
ggtttgtcatttgattttctaagatttgcgttatgatttagatg |
2502634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 98 - 139
Target Start/End: Original strand, 33027142 - 33027183
Alignment:
| Q |
98 |
gcattagagggtttgtcatttgattttttaagatttgagtta |
139 |
Q |
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| T |
33027142 |
gcattagatggtttgtcatttgattttctaaaatttgagtta |
33027183 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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