View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18600_high_11 (Length: 392)
Name: NF18600_high_11
Description: NF18600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18600_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 19 - 354
Target Start/End: Original strand, 49374265 - 49374600
Alignment:
| Q |
19 |
agtttgtcgtagggtaaagtgctatcgacgataatcatggaagaaagttgaatgctcagagatcgccgaggactctcgtttgatactgaagtcaattcac |
118 |
Q |
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| T |
49374265 |
agtttgtcgtagggtaaagtgcaatcgacgataatcatggaagaaagttgaatgctcagagatcgccgaggactctcgtttgatactgaagtcaattcac |
49374364 |
T |
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| Q |
119 |
tcatgatttcactcgtagcgtcctcgattgcgcnnnnnnnnnnnnnnnnnnnnnnctcgttctagaaatggaacttggatctgaattctgatttctgaaa |
218 |
Q |
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| T |
49374365 |
tcatgatttcactcgtagcgtcctcgattgcgcgaagaagaagaagaagaagagactcgttctagaaatggaacttggatctgaattctgatttctgaaa |
49374464 |
T |
|
| Q |
219 |
gacgttaatattgtttgtttcgtagacgttgatgacggttacgcgaacgtctctaatctttataacggttttcttttcacccgcctttcactttcccttc |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49374465 |
gacgttaatattgtttgtttcgtagacgttgatgacggttacgcgaacgtctctaatctttataacggttttcttttcacccgcctttcactttcccttc |
49374564 |
T |
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| Q |
319 |
cctccgtttttcctatttggattggatataattata |
354 |
Q |
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| T |
49374565 |
cctccgtttttcctatttggattggatataattata |
49374600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 345 - 381
Target Start/End: Complemental strand, 22274502 - 22274466
Alignment:
| Q |
345 |
tataattataagggttaaatatgttcttggtccctat |
381 |
Q |
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| T |
22274502 |
tataattataagggttaaatatgtttttggtccctat |
22274466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 344 - 381
Target Start/End: Original strand, 34448672 - 34448709
Alignment:
| Q |
344 |
atataattataagggttaaatatgttcttggtccctat |
381 |
Q |
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|||| ||||||||||||||||||||| ||||||||||| |
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| T |
34448672 |
atatcattataagggttaaatatgtttttggtccctat |
34448709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 345 - 381
Target Start/End: Original strand, 27727089 - 27727125
Alignment:
| Q |
345 |
tataattataagggttaaatatgttcttggtccctat |
381 |
Q |
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|||||| |||||||||||||||||| ||||||||||| |
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| T |
27727089 |
tataataataagggttaaatatgtttttggtccctat |
27727125 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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