View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18600_high_16 (Length: 326)
Name: NF18600_high_16
Description: NF18600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18600_high_16 |
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Alignment Details
Target: chr1 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 19 - 297
Target Start/End: Original strand, 33316810 - 33317088
Alignment:
| Q |
19 |
tccacttgaaggataaagtcatatgacataatgattgacaagcattactgagaaaaagctatctttattgttgtgatgaattcatatccacaacacagac |
118 |
Q |
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| T |
33316810 |
tccacttgaaggataaagtcatatgacataatgattgacaagcattactgagaaaaagctatctttattgttgtgatgaattcatatccacaacacagac |
33316909 |
T |
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| Q |
119 |
ttattaaagtaattattgacttgctttgatgcatttgataattgctatacatcttttacttgactcttttgttctaaatatacaagatattacgaatttt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33316910 |
ttattaaagtaattattgacttgctttgatgcatttgataattgctatacatcttttacttgactcttttgttctaaatatacaagatattacgaatttt |
33317009 |
T |
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| Q |
219 |
gtataatcatttacttacttactagagacctgcgctcgcagatctcaaccaatgaatgaagatctgacgagctgtattt |
297 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
33317010 |
gtataatcatttacttacttactagagacctgcgcttgcagatctcaaccaatgaatgaagatctgacgagctgtattt |
33317088 |
T |
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