View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18600_high_22 (Length: 293)
Name: NF18600_high_22
Description: NF18600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18600_high_22 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 288
Target Start/End: Original strand, 48527934 - 48528221
Alignment:
| Q |
1 |
cattactattctcaatatgcggtggttagaactaaaacgtttttgttatcaaccaaacacgaaattggtgaatcaggatgcactacataaaccctcttgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48527934 |
cattactattctcaatatgcggtggttagaactaaaacgtttttgttatcaaccaaacacgaaattggtgaatcaggatgcactacataaaccctcttgt |
48528033 |
T |
|
| Q |
101 |
tttaattttaaaatcacctaaaataaacaaacaaaacaataatttgttttttatgaagtgaatggttcttattatatcacctaaaataaacatctatcct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48528034 |
tttaattttaaaatcacctaaaataaacaaacaaaacaataatttgttttttatgaagtgaatggttcttattatatcacctaaaataaacatctatcct |
48528133 |
T |
|
| Q |
201 |
tatatggccgcgtcccattttataacatgatttgagattttcccaactgaaaatcaaatatgctaaacaatatttttatattcttcga |
288 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
48528134 |
tatatggccgcgtcccattttataacatgatttgagattttcccaactgaaaatcaaatatgctaaacaatatttttattttcttcga |
48528221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University