View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18600_high_24 (Length: 278)

Name: NF18600_high_24
Description: NF18600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18600_high_24
NF18600_high_24
[»] chr2 (5 HSPs)
chr2 (175-274)||(14431453-14431552)
chr2 (200-265)||(15275350-15275415)
chr2 (200-256)||(15263718-15263774)
chr2 (94-131)||(14431665-14431702)
chr2 (200-263)||(15251204-15251267)


Alignment Details
Target: chr2 (Bit Score: 96; Significance: 4e-47; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 175 - 274
Target Start/End: Complemental strand, 14431552 - 14431453
Alignment:
Q  175 ttctttgttcatgaacatggaatatagaaccttagaactcaacatcatatccgctaaagatctcaaaaatgttaatcttttctccaagatgaacgtttac 274  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  14431552 ttctttgttcatgaacatggaatatagaaccttagaactcaacatcatatccgctaaagatctcaaaaatgttaatcttttctccaagatggacgtttac 14431453  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 200 - 265
Target Start/End: Original strand, 15275350 - 15275415
Alignment:
Q  200 agaaccttagaactcaacatcatatccgctaaagatctcaaaaatgttaatcttttctccaagatg 265  Q
    ||||||||||||||| |||| || ||||| |||||||| ||| ||||||||||||||||| |||||    
T  15275350 agaaccttagaactcgacattatttccgcaaaagatctaaaagatgttaatcttttctcccagatg 15275415  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 200 - 256
Target Start/End: Original strand, 15263718 - 15263774
Alignment:
Q  200 agaaccttagaactcaacatcatatccgctaaagatctcaaaaatgttaatcttttc 256  Q
    |||||||||||||||||||| || ||||| |||||||||||| |||||||| |||||    
T  15263718 agaaccttagaactcaacatgatttccgcaaaagatctcaaagatgttaatattttc 15263774  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 94 - 131
Target Start/End: Complemental strand, 14431702 - 14431665
Alignment:
Q  94 aaattataaataccttctgttacatagtataaacatcc 131  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  14431702 aaattataaataccttctgttacatcgtataaacatcc 14431665  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 200 - 263
Target Start/End: Original strand, 15251204 - 15251267
Alignment:
Q  200 agaaccttagaactcaacatcatatccgctaaagatctcaaaaatgttaatcttttctccaaga 263  Q
    |||||||||||||| ||||| ||||  || ||||||||||||  | ||||||||||||||||||    
T  15251204 agaaccttagaacttaacataatatgtgcaaaagatctcaaaggttttaatcttttctccaaga 15251267  T

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