View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18600_high_32 (Length: 250)
Name: NF18600_high_32
Description: NF18600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18600_high_32 |
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Alignment Details
Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 5 - 234
Target Start/End: Complemental strand, 48527953 - 48527720
Alignment:
| Q |
5 |
gcattttgagaatagtaatgtgtaaattaggttctaaatgaaggttggaaaatctattcacagaataaataaaggatttaaggcttctttcctttacaac |
104 |
Q |
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| T |
48527953 |
gcatattgagaatagtaatgtgtaaattaggttctaaatgaaggttggaaaatctattcacagaataaataaaggatttaaggcttctttcctttacaac |
48527854 |
T |
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| Q |
105 |
catctcatagcttgttccttttcatttcattccatcc----tctaaaacatactctcttgcttttcccgccatcacaaaataaaaccaacacccaaatca |
200 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48527853 |
catctcatagcttgttccttttcatttcattccatcctctatctaaaacatactctcttgcttttcccgccatcacaaaataaaaccaacacccaaatca |
48527754 |
T |
|
| Q |
201 |
aagaatttgttaccaatctttacattacatatat |
234 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
48527753 |
aagaatttgttaccaatctttacattacatatat |
48527720 |
T |
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