View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18600_high_33 (Length: 241)

Name: NF18600_high_33
Description: NF18600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18600_high_33
NF18600_high_33
[»] chr2 (2 HSPs)
chr2 (12-241)||(2762047-2762276)
chr2 (58-115)||(3395410-3395467)
[»] chr8 (3 HSPs)
chr8 (58-115)||(23141753-23141810)
chr8 (58-115)||(42797243-42797300)
chr8 (47-91)||(38259275-38259319)
[»] chr3 (1 HSPs)
chr3 (58-115)||(50331916-50331973)
[»] chr6 (1 HSPs)
chr6 (63-115)||(1599754-1599806)
[»] scaffold0061 (1 HSPs)
scaffold0061 (53-123)||(45608-45678)
[»] scaffold0017 (1 HSPs)
scaffold0017 (53-123)||(153109-153179)
[»] scaffold0380 (1 HSPs)
scaffold0380 (58-118)||(14573-14633)
[»] scaffold0024 (1 HSPs)
scaffold0024 (54-118)||(47113-47177)


Alignment Details
Target: chr2 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 12 - 241
Target Start/End: Original strand, 2762047 - 2762276
Alignment:
Q  12 atcatcatattgaactatgactaaccagacaaataaattttaacaccacatcttcaccaaaagttttaagacattagatacatgagtcagctcatttata 111  Q
    ||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  2762047 atcatcatattgaactatgactaaccagacaaataaattttcataccacatcttcaccaaaagctttaagacattagatacatgagtcagctcatttata 2762146  T
Q  112 tgttgtttaattttctacttttctatctaatacttataactta-tatcattaaactcaaccccgttgatatgtcatgatctatttaaaaggtgaaagaca 210  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  2762147 tgttgtttaattttctacttttctatctaatacttataacttattatcattaaactcaa-cccgttgatatgtcatgatctatttaaaaggtgaaagaca 2762245  T
Q  211 tgaagttgatactatataaacctatttgctt 241  Q
    |||||||||||||||||||||||||||||||    
T  2762246 tgaagttgatactatataaacctatttgctt 2762276  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 58 - 115
Target Start/End: Original strand, 3395410 - 3395467
Alignment:
Q  58 cacatcttcaccaaaagttttaagacattagatacatgagtcagctcatttatatgtt 115  Q
    |||| ||||||| ||| | ||||||||||||||| |||||||| |||| |||||||||    
T  3395410 cacaacttcacccaaaatcttaagacattagatatatgagtcatctcacttatatgtt 3395467  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 58 - 115
Target Start/End: Original strand, 23141753 - 23141810
Alignment:
Q  58 cacatcttcaccaaaagttttaagacattagatacatgagtcagctcatttatatgtt 115  Q
    |||| ||||||| ||| | |||||||||||||||||||||||| ||||||||||||||    
T  23141753 cacaacttcacccaaaatcttaagacattagatacatgagtcatctcatttatatgtt 23141810  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 58 - 115
Target Start/End: Original strand, 42797243 - 42797300
Alignment:
Q  58 cacatcttcaccaaaagttttaagacattagatacatgagtcagctcatttatatgtt 115  Q
    |||| ||||||| ||| | |||||||||||||||||||||||| |||| |||||||||    
T  42797243 cacaacttcacccaaaatcttaagacattagatacatgagtcatctcacttatatgtt 42797300  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 91
Target Start/End: Original strand, 38259275 - 38259319
Alignment:
Q  47 aattttaacaccacatcttcaccaaaagttttaagacattagata 91  Q
    |||||||||||||||| |||| || || |||||||||||||||||    
T  38259275 aattttaacaccacattttcatcagaaattttaagacattagata 38259319  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 58 - 115
Target Start/End: Original strand, 50331916 - 50331973
Alignment:
Q  58 cacatcttcaccaaaagttttaagacattagatacatgagtcagctcatttatatgtt 115  Q
    |||| ||||||| ||| | |||||||||||||||||||||||| |||| |||||||||    
T  50331916 cacaacttcacccaaaatcttaagacattagatacatgagtcatctcacttatatgtt 50331973  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 115
Target Start/End: Complemental strand, 1599806 - 1599754
Alignment:
Q  63 cttcaccaaaagttttaagacattagatacatgagtcagctcatttatatgtt 115  Q
    ||||||| ||| | |||||||||||||||||||||||| |||| |||||||||    
T  1599806 cttcacccaaaatcttaagacattagatacatgagtcatctcacttatatgtt 1599754  T

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Target: scaffold0061 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 123
Target Start/End: Original strand, 45608 - 45678
Alignment:
Q  53 aacaccacatcttcaccaaaagttttaagacattagatacatgagtcagctcatttatatgttgtttaatt 123  Q
    ||||||| ||||||||| ||| | |||||||||||| || ||  |||| ||||||||||||||| ||||||    
T  45608 aacaccaaatcttcacccaaaatcttaagacattaggtatatttgtcatctcatttatatgttgcttaatt 45678  T

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Target: scaffold0017 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 123
Target Start/End: Complemental strand, 153179 - 153109
Alignment:
Q  53 aacaccacatcttcaccaaaagttttaagacattagatacatgagtcagctcatttatatgttgtttaatt 123  Q
    ||||||| ||||||||| ||| | |||||||||||| || ||  |||| ||||||||||||||| ||||||    
T  153179 aacaccaaatcttcacccaaaatcttaagacattaggtatatttgtcatctcatttatatgttgcttaatt 153109  T

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Target: scaffold0380 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0380
Description:

Target: scaffold0380; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 118
Target Start/End: Complemental strand, 14633 - 14573
Alignment:
Q  58 cacatcttcaccaaaagttttaagacattagatacatgagtcagctcatttatatgttgtt 118  Q
    |||| ||||||| ||| | ||||||||||| |||  ||||||| |||||||||||||||||    
T  14633 cacaacttcacccaaaatcttaagacattaaatatgtgagtcatctcatttatatgttgtt 14573  T

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Target: scaffold0024 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 118
Target Start/End: Original strand, 47113 - 47177
Alignment:
Q  54 acaccacatcttcaccaaaagttttaagacattagatacatgagtcagctcatttatatgttgtt 118  Q
    |||||||||||||||| ||||| ||||||||| || ||  || |||| |||| ||||||||||||    
T  47113 acaccacatcttcacccaaagtcttaagacatgaggtatgtgtgtcatctcacttatatgttgtt 47177  T

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